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INSTALL report for affypdnn on tokay2

This page was generated on 2020-10-17 11:56:03 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE affypdnn PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 33/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
affypdnn 1.62.0
Laurent Gautier
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/affypdnn
Branch: RELEASE_3_11
Last Commit: 22a6e97
Last Changed Date: 2020-04-27 14:09:01 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  ERROR 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  ERROR  OK 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  ERROR  OK 

Summary

Package: affypdnn
Version: 1.62.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/affypdnn_1.62.0.tar.gz && rm -rf affypdnn.buildbin-libdir && mkdir affypdnn.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=affypdnn.buildbin-libdir affypdnn_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL affypdnn_1.62.0.zip && rm affypdnn_1.62.0.tar.gz affypdnn_1.62.0.zip
StartedAt: 2020-10-16 16:54:15 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 16:54:57 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 42.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/affypdnn_1.62.0.tar.gz && rm -rf affypdnn.buildbin-libdir && mkdir affypdnn.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=affypdnn.buildbin-libdir affypdnn_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL affypdnn_1.62.0.zip && rm affypdnn_1.62.0.tar.gz affypdnn_1.62.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 11.7M  100 11.7M    0     0  60.7M      0 --:--:-- --:--:-- --:--:-- 62.9M

install for i386

* installing *source* package 'affypdnn' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'affypdnn'
    finding HTML links ... done
    chiptype.pdnn.params                    html  
    expressopdnn                            html  
    find.params.pdnn                        html  
    generateExprVal.method.pdnn             html  
    matplotProbesPDNN                       html  
    params.dilution                         html  
    pdnn.params.chiptype                    html  
    transform.ProbeSet                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
registering new summary method 'pdnn'.
registering new pmcorrect method 'pdnn' and 'pdnnpredict'.
Warning: Package 'affypdnn' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package can be loaded from final location
registering new summary method 'pdnn'.
registering new pmcorrect method 'pdnn' and 'pdnnpredict'.
Warning: Package 'affypdnn' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'affypdnn' ...
** testing if installed package can be loaded
registering new summary method 'pdnn'.
registering new pmcorrect method 'pdnn' and 'pdnnpredict'.
Warning: Package 'affypdnn' is deprecated and will be removed from Bioconductor
  version 3.12
* MD5 sums
packaged installation of 'affypdnn' as affypdnn_1.62.0.zip
* DONE (affypdnn)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'affypdnn' successfully unpacked and MD5 sums checked