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BUILD report for CellMapper on celaya2

This page was generated on 2020-01-16 13:45:52 -0500 (Thu, 16 Jan 2020).

Package 243/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellMapper 1.13.0
Brad Nelms
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/CellMapper
Branch: master
Last Commit: 77b4358
Last Changed Date: 2019-12-18 02:30:57 -0500 (Wed, 18 Dec 2019)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: CellMapper
Version: 1.13.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CellMapper
StartedAt: 2020-01-15 22:58:07 -0500 (Wed, 15 Jan 2020)
EndedAt: 2020-01-15 22:58:45 -0500 (Wed, 15 Jan 2020)
EllapsedTime: 38.5 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CellMapper
###
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* checking for file ‘CellMapper/DESCRIPTION’ ... OK
* preparing ‘CellMapper’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CellMapper.Rnw’ using Sweave
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Loading required package: AnnotationHub
Loading required package: BiocFileCache
Loading required package: dbplyr
snapshotDate(): 2020-01-08
Warning: replacing previous import ‘stats::sd’ by ‘S4Vectors::sd’ when loading ‘CellMapper’
Warning: replacing previous import ‘stats::var’ by ‘S4Vectors::var’ when loading ‘CellMapper’
see ?CellMapperData and browseVignettes('CellMapperData') for documentation
loading from cache
snapshotDate(): 2020-01-08
see ?CellMapperData and browseVignettes('CellMapperData') for documentation
loading from cache
* Running CellMapper with query gene(s) '2571'...

see ?CellMapperData and browseVignettes('CellMapperData') for documentation
loading from cache
Warning: file ‘ea9336f8e8ce_171’ has magic number 'X'
  Use of save versions prior to 2 is deprecated

Error: processing vignette 'CellMapper.Rnw' failed with diagnostics:
 chunk 12 
Error : failed to load resource
  name: EH171
  title: Pre-processed microarray data from the Affymetrix HG-U133PlusV2 platform
  reason: bad restore file magic number (file may be corrupted) -- no data loaded

--- failed re-building ‘CellMapper.Rnw’

SUMMARY: processing the following file failed:
  ‘CellMapper.Rnw’

Error: Vignette re-building failed.
Execution halted