Back to Multiple platform build/check report for BioC 3.11
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for CATALYST on tokay2

This page was generated on 2020-10-17 11:56:12 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE CATALYST PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 234/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CATALYST 1.12.2
Helena L. Crowell
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/CATALYST
Branch: RELEASE_3_11
Last Commit: 3846718
Last Changed Date: 2020-07-02 09:14:54 -0400 (Thu, 02 Jul 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CATALYST
Version: 1.12.2
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CATALYST_1.12.2.tar.gz && rm -rf CATALYST.buildbin-libdir && mkdir CATALYST.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CATALYST.buildbin-libdir CATALYST_1.12.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CATALYST_1.12.2.zip && rm CATALYST_1.12.2.tar.gz CATALYST_1.12.2.zip
StartedAt: 2020-10-16 18:51:28 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:52:52 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 84.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CATALYST_1.12.2.tar.gz && rm -rf CATALYST.buildbin-libdir && mkdir CATALYST.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CATALYST.buildbin-libdir CATALYST_1.12.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CATALYST_1.12.2.zip && rm CATALYST_1.12.2.tar.gz CATALYST_1.12.2.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 3591k  100 3591k    0     0  38.0M      0 --:--:-- --:--:-- --:--:-- 41.2M

install for i386

* installing *source* package 'CATALYST' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CATALYST'
    finding HTML links ... done
    SCE-accessors                           html  
    finding level-2 HTML links ... done

    adaptSpillmat                           html  
    applyCutoffs                            html  
    assignPrelim                            html  
    clrDR                                   html  
    cluster                                 html  
    compCytof                               html  
    computeSpillmat                         html  
    data                                    html  
    estCutoffs                              html  
    extractClusters                         html  
    filterSCE                               html  
    guessPanel                              html  
    mergeClusters                           html  
    normCytof                               html  
    pbMDS                                   html  
    plotAbundances                          html  
    plotClusterExprs                        html  
    plotClusterHeatmap                      html  
    plotCodes                               html  
    plotCounts                              html  
    plotDR                                  html  
    plotDiffHeatmap                         html  
    plotEvents                              html  
    plotExprHeatmap                         html  
    plotExprs                               html  
    plotFreqHeatmap                         html  
    plotMahal                               html  
    plotMultiHeatmap                        html  
    plotNRS                                 html  
    plotPbExprs                             html  
    plotScatter                             html  
    plotSpillmat                            html  
    plotYields                              html  
    prepData                                html  
    runDR                                   html  
    sce2fcs                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CATALYST' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CATALYST' as CATALYST_1.12.2.zip
* DONE (CATALYST)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'CATALYST' successfully unpacked and MD5 sums checked