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BUILD BIN report for adSplit on machv2

This page was generated on 2020-10-17 11:58:01 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE adSplit PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 20/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
adSplit 1.58.0
Claudio Lottaz
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/adSplit
Branch: RELEASE_3_11
Last Commit: 0398559
Last Changed Date: 2020-04-27 14:12:56 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: adSplit
Version: 1.58.0
Command: rm -rf adSplit.buildbin-libdir && mkdir adSplit.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh adSplit_1.58.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R adSplit.buildbin-libdir
StartedAt: 2020-10-17 06:33:09 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 06:33:54 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 44.9 seconds
RetCode: 0
Status:  OK 
PackageFile: adSplit_1.58.0.tgz
PackageFileSize: 342 KiB

Command output

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###
### Running command:
###
###   rm -rf adSplit.buildbin-libdir && mkdir adSplit.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh adSplit_1.58.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R adSplit.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=adSplit.buildbin-libdir adSplit_1.58.0.tar.gz'
>>>>>>> 

* installing *source* package ‘adSplit’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c adSplit.cpp -o adSplit.o
adSplit.cpp:256:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings]
    throw Tomato(__LINE__, "tscore: internal error, shame on the programmer");
                           ^
adSplit.cpp:469:30: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings]
      throw Tomato(__LINE__, "isis() called with unknown function");
                             ^
2 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o adSplit.so adSplit.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.11-bioc/meat/adSplit.buildbin-libdir/00LOCK-adSplit/00new/adSplit/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (adSplit)


>>>>>>> 
>>>>>>> FIXING LINKS FOR adSplit.buildbin-libdir/adSplit/libs/adSplit.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "adSplit.buildbin-libdir/adSplit/libs/adSplit.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "adSplit.buildbin-libdir/adSplit/libs/adSplit.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "adSplit.buildbin-libdir/adSplit/libs/adSplit.so"