JiaHong Fong
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/abseqR |
| Branch: RELEASE_3_11 |
| Last Commit: 80a5eaa |
| Last Changed Date: 2020-04-27 15:21:22 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:02 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE abseqR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 9/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| abseqR 1.6.0 JiaHong Fong
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: abseqR |
| Version: 1.6.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/abseqR_1.6.0.tar.gz && rm -rf abseqR.buildbin-libdir && mkdir abseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=abseqR.buildbin-libdir abseqR_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL abseqR_1.6.0.zip && rm abseqR_1.6.0.tar.gz abseqR_1.6.0.zip |
| StartedAt: 2020-10-16 18:34:01 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:35:56 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 114.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/abseqR_1.6.0.tar.gz && rm -rf abseqR.buildbin-libdir && mkdir abseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=abseqR.buildbin-libdir abseqR_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL abseqR_1.6.0.zip && rm abseqR_1.6.0.tar.gz abseqR_1.6.0.zip
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install for i386
* installing *source* package 'abseqR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'abseqR'
finding HTML links ... done
AbSeqCRep-class html
AbSeqRep-class html
abseqReport html
dot-UTR5Analysis html
dot-abundanceAnalysis html
dot-abundancePlot html
dot-alignQualityHeatMaps html
dot-allPrimerNames html
dot-aminoAcidBar html
dot-aminoAcidPlot html
dot-analyzeUpstreamValidity html
dot-annotAnalysis html
dot-asRepertoireAlignLen html
dot-asRepertoireBitscore html
dot-asRepertoireChain html
dot-asRepertoireDir html
dot-asRepertoireList html
dot-asRepertoireName html
dot-asRepertoirePrimer3 html
dot-asRepertoirePrimer5 html
dot-asRepertoireQueryStart html
dot-asRepertoireSubjectStart html
dot-asRepertoireUpstream html
dot-boxPlot html
dot-calculateDInd html
dot-calculateDiversityEstimates html
dot-canonicalizeTitle html
dot-capitalize html
dot-checkVert html
dot-cloneDistHist html
dot-cloneDistMarginal html
dot-clonotypeAnalysis html
dot-collateReports html
dot-commonPrimerNames html
dot-correlationTest html
dot-distanceMeasure html
dot-diversityAnalysis html
dot-emptyPlot html
dot-findRepertoires html
dot-generateAllSpectratypes html
dot-generateDelayedReport html
dot-generateReport html
dot-getLineTypes html
dot-getTotal html
dot-hmFromMatrix html
dot-inferAnalyzed html
dot-loadMatrixFromDF html
dot-loadSamplesFromString html
dot-pairwiseComparison html
dot-plotCirclize html
dot-plotDist html
dot-plotDiversityCurves html
dot-plotDuplication html
dot-plotErrorDist html
dot-plotIGVErrors html
dot-plotIGVUpstreamLenDist html
dot-plotIGVUpstreamLenDistDetailed html
dot-plotPrimerIGVStatus html
dot-plotPrimerIntegrity html
dot-plotRarefaction html
dot-plotRecapture html
dot-plotSamples html
dot-plotSpectratype html
dot-plotUpstreamLength html
dot-plotUpstreamLengthDist html
dot-primerAnalysis html
dot-prodDistPlot html
dot-productivityAnalysis html
dot-productivityPlot html
dot-readSummary html
dot-regionAnalysis html
dot-reportLBE html
dot-saveAs html
dot-scatterPlot html
dot-scatterPlotComplex html
dot-secretionSignalAnalysis html
dot-substituteStringInFile html
dot-summarySE html
dot-topNDist html
dot-vennIntersection html
plus-AbSeqCRep-AbSeqCRep-method html
plus-AbSeqCRep-AbSeqRep-method html
plus-AbSeqRep-AbSeqCRep-method html
plus-AbSeqRep-AbSeqRep-method html
report html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'abseqR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'abseqR' as abseqR_1.6.0.zip
* DONE (abseqR)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'abseqR' successfully unpacked and MD5 sums checked