Back to Multiple platform build/check report for BioC 3.11
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

BUILD report for ArrayTV on machv2

This page was generated on 2020-10-17 11:58:04 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE ArrayTV PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 84/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ArrayTV 1.26.0
Eitan Halper-Stromberg
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/ArrayTV
Branch: RELEASE_3_11
Last Commit: 7b47684
Last Changed Date: 2020-04-27 14:36:23 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: ArrayTV
Version: 1.26.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ArrayTV
StartedAt: 2020-10-16 17:47:05 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:48:12 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 67.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ArrayTV
###
##############################################################################
##############################################################################


* checking for file ‘ArrayTV/DESCRIPTION’ ... OK
* preparing ‘ArrayTV’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ArrayTV.Rnw’ using Sweave
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Loading required package: BSgenome
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated,
    append, as.data.frame, basename, cbind, colnames, dirname,
    do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:base’:

    expand.grid

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: XVector

Attaching package: ‘Biostrings’

The following object is masked from ‘package:base’:

    strsplit

Loading required package: rtracklayer

Error: processing vignette 'ArrayTV.Rnw' failed with diagnostics:
 chunk 6 (label = tvscorefig) 
Error in plot.xy(xy, type, ...) : invalid color name 'NimbleGen'

--- failed re-building ‘ArrayTV.Rnw’

SUMMARY: processing the following file failed:
  ‘ArrayTV.Rnw’

Error: Vignette re-building failed.
Execution halted