Back to Multiple platform build/check report for BioC 3.11
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for AnnotationForge on tokay2

This page was generated on 2020-10-17 11:56:05 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE AnnotationForge PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 63/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnnotationForge 1.30.1
Bioconductor Package Maintainer
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/AnnotationForge
Branch: RELEASE_3_11
Last Commit: 3f93a43
Last Changed Date: 2020-04-30 10:29:20 -0400 (Thu, 30 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: AnnotationForge
Version: 1.30.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/AnnotationForge_1.30.1.tar.gz && rm -rf AnnotationForge.buildbin-libdir && mkdir AnnotationForge.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AnnotationForge.buildbin-libdir AnnotationForge_1.30.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL AnnotationForge_1.30.1.zip && rm AnnotationForge_1.30.1.tar.gz AnnotationForge_1.30.1.zip
StartedAt: 2020-10-16 17:20:36 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:25:01 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 265.4 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/AnnotationForge_1.30.1.tar.gz && rm -rf AnnotationForge.buildbin-libdir && mkdir AnnotationForge.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AnnotationForge.buildbin-libdir AnnotationForge_1.30.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL AnnotationForge_1.30.1.zip && rm AnnotationForge_1.30.1.tar.gz AnnotationForge_1.30.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 3289k  100 3289k    0     0  27.2M      0 --:--:-- --:--:-- --:--:-- 28.9M

install for i386

* installing *source* package 'AnnotationForge' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'AnnotationForge'
    finding HTML links ... done
    AnnDbPkg-maker                          html  
    finding level-2 HTML links ... done

    available.db0pkgs                       html  
    generateSeqnames_db                     html  
    getProbeDataAffy                        html  
    getProbeData_1lq                        html  
    makeChipPackageFromDataFrames           html  
    makeInpDb                               html  
    makeOrgPackage                          html  
    makeOrgPackageFromNCBI                  html  
    makeProbePackage                        html  
    sqlForge-makeCHIPDB                     html  
    sqlForge-popDB                          html  
    sqlForge-wrapDBPackages                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'AnnotationForge' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AnnotationForge' as AnnotationForge_1.30.1.zip
* DONE (AnnotationForge)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'AnnotationForge' successfully unpacked and MD5 sums checked