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BUILD BIN report for AnalysisPageServer on machv2

This page was generated on 2020-10-17 11:58:02 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE AnalysisPageServer PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 52/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnalysisPageServer 1.22.0
Brad Friedman
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/AnalysisPageServer
Branch: RELEASE_3_11
Last Commit: 2a18bb2
Last Changed Date: 2020-04-27 14:45:57 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  ERROR 
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  ERROR  OK 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  ERROR [ OK ]

Summary

Package: AnalysisPageServer
Version: 1.22.0
Command: rm -rf AnalysisPageServer.buildbin-libdir && mkdir AnalysisPageServer.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh AnalysisPageServer_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R AnalysisPageServer.buildbin-libdir
StartedAt: 2020-10-17 06:34:56 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 06:35:37 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 40.8 seconds
RetCode: 0
Status:  OK 
PackageFile: AnalysisPageServer_1.22.0.tgz
PackageFileSize: 22.25 MiB

Command output

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### Running command:
###
###   rm -rf AnalysisPageServer.buildbin-libdir && mkdir AnalysisPageServer.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh AnalysisPageServer_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R AnalysisPageServer.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=AnalysisPageServer.buildbin-libdir AnalysisPageServer_1.22.0.tar.gz'
>>>>>>> 

* installing *source* package ‘AnalysisPageServer’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c AnalysisPageSVG.cpp -o AnalysisPageSVG.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_init_AnalysisPageServer.cpp -o R_init_AnalysisPageServer.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c SearchReplace2.cpp -o SearchReplace2.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c catch.c -o catch.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c cor.cpp -o cor.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c tinyxml2.cpp -o tinyxml2.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o AnalysisPageServer.so AnalysisPageSVG.o R_init_AnalysisPageServer.o SearchReplace2.o catch.o cor.o tinyxml2.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.11-bioc/meat/AnalysisPageServer.buildbin-libdir/00LOCK-AnalysisPageServer/00new/AnalysisPageServer/libs
** R
** inst
** byte-compile and prepare package for lazy loading
While loading AnalysisPageServer: urlEncode not found, providing a pure R implementation
While loading AnalysisPageServer: urlDecode not found, providing a pure R implementation
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'AnalysisPageServer' is deprecated and will be removed from
  Bioconductor version 3.12
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: Package 'AnalysisPageServer' is deprecated and will be removed from
  Bioconductor version 3.12
** testing if installed package keeps a record of temporary installation path
* DONE (AnalysisPageServer)


>>>>>>> 
>>>>>>> FIXING LINKS FOR AnalysisPageServer.buildbin-libdir/AnalysisPageServer/libs/AnalysisPageServer.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "AnalysisPageServer.buildbin-libdir/AnalysisPageServer/libs/AnalysisPageServer.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "AnalysisPageServer.buildbin-libdir/AnalysisPageServer/libs/AnalysisPageServer.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "AnalysisPageServer.buildbin-libdir/AnalysisPageServer/libs/AnalysisPageServer.so"