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CHECK report for WES.1KG.WUGSC on malbec1

This page was generated on 2020-04-14 17:46:23 -0400 (Tue, 14 Apr 2020).

Package 375/384HostnameOS / ArchINSTALLBUILDCHECK
WES.1KG.WUGSC 1.18.0
Yuchao Jiang
Snapshot Date: 2020-04-14 09:30:11 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/WES.1KG.WUGSC
Branch: RELEASE_3_10
Last Commit: 7bfa137
Last Changed Date: 2019-10-29 13:29:43 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: WES.1KG.WUGSC
Version: 1.18.0
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:WES.1KG.WUGSC.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings WES.1KG.WUGSC_1.18.0.tar.gz
StartedAt: 2020-04-14 13:23:33 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 13:23:50 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 16.3 seconds
RetCode: 0
Status:  OK 
CheckDir: WES.1KG.WUGSC.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:WES.1KG.WUGSC.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings WES.1KG.WUGSC_1.18.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.10-data-experiment/meat/WES.1KG.WUGSC.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘WES.1KG.WUGSC/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘WES.1KG.WUGSC’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘WES.1KG.WUGSC’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 373.9Mb
  sub-directories of 1Mb or more:
    extdata  373.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.10-data-experiment/meat/WES.1KG.WUGSC.Rcheck/00check.log’
for details.



Installation output

WES.1KG.WUGSC.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL WES.1KG.WUGSC
###
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘WES.1KG.WUGSC’ ...
** using staged installation
** inst
** help
No man pages found in package  ‘WES.1KG.WUGSC’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (WES.1KG.WUGSC)

Tests output


Example timings