Build/check report for BioC 3.10 experimental data - CHECK report for benchmarkfdrData2019 on malbec1

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:benchmarkfdrData2019.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings benchmarkfdrData2019_1.0.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.10-data-experiment/meat/benchmarkfdrData2019.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘benchmarkfdrData2019/DESCRIPTION’ ... OK
* this is package ‘benchmarkfdrData2019’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... NOTE
Found the following non-portable file paths:
  benchmarkfdrData2019/inst/scripts/make-data/Simulations/simulations-varyinginformativeness-discrete.Rmd
  benchmarkfdrData2019/inst/scripts/make-data/Simulations/simulations-varyinginformativeness-smooth.Rmd
  benchmarkfdrData2019/inst/scripts/make-data/YeastInSilico/yeast-simulation-bimodalalternative-highpi0.Rmd

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘benchmarkfdrData2019’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘SummarizedExperiment’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.10-data-experiment/meat/benchmarkfdrData2019.Rcheck/00check.log’
for details.

Installation output

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL benchmarkfdrData2019
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘benchmarkfdrData2019’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2019-10-22
** testing if installed package can be loaded from final location
snapshotDate(): 2019-10-22
** testing if installed package keeps a record of temporary installation path
* DONE (benchmarkfdrData2019)

Tests output

Example timings

name	user	system	elapsed
chipseq-cbp	0.944	0.020	1.071
chipseq-h3k4me3	0.828	0.008	0.913
gsa-human	0.688	0.008	0.758
gsa-mouse	0.676	0.004	0.762
gwas-bmi	0.648	0.012	0.731
microbiome-baxter	0.632	0.004	0.750
microbiome-enigma	0.780	0.008	0.890
microbiome-goodrich	0.628	0.016	0.711
microbiome-papa	0.660	0.012	0.745
microbiome-schubert	0.660	0.016	0.744
polyester-insilico	1.156	0.008	1.265
rnaseq-brain	0.632	0.012	0.713
rnaseq-mir200c	0.676	0.012	0.765
scrnaseq-human	0.860	0.020	0.964
scrnaseq-mouse	0.980	0.000	1.049
sims-informative-cosine	0.880	0.016	0.982
sims-informative-cubic	0.940	0.020	1.036
sims-informative-sine	0.884	0.016	0.969
sims-informative-step	1.024	0.020	1.116
sims-null	0.744	0.008	0.821
sims-uasettings-25	0.632	0.024	0.742
sims-uasettings-t	0.740	0.008	0.820
sims-uasettings	0.732	0.008	0.803
sims-varyinginfo-discrete	0.656	0.004	0.727
sims-varyinginfo-smooth	0.640	0.020	0.735
sims-varyingntests	0.836	0.016	0.918
sims-varyingpi0-t	0.712	0.012	0.796
sims-varyingpi0	0.656	0.008	0.760
yeast-insilico	0.632	0.008	0.733

CHECK report for benchmarkfdrData2019 on malbec1

Summary

Command output

Installation output

Tests output

Example timings