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INSTALL report for celda on tokay1

This page was generated on 2020-04-15 12:32:29 -0400 (Wed, 15 Apr 2020).

Package 238/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
celda 1.2.4
Joshua Campbell
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/celda
Branch: RELEASE_3_10
Last Commit: d12778d
Last Changed Date: 2020-01-21 21:59:07 -0400 (Tue, 21 Jan 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: celda
Version: 1.2.4
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/celda_1.2.4.tar.gz && rm -rf celda.buildbin-libdir && mkdir celda.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=celda.buildbin-libdir celda_1.2.4.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL celda_1.2.4.zip && rm celda_1.2.4.tar.gz celda_1.2.4.zip
StartedAt: 2020-04-14 20:15:54 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 20:18:31 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 156.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/celda_1.2.4.tar.gz && rm -rf celda.buildbin-libdir && mkdir celda.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=celda.buildbin-libdir celda_1.2.4.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL celda_1.2.4.zip && rm celda_1.2.4.tar.gz celda_1.2.4.zip
###
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install for i386

* installing *source* package 'celda' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c cG_calcGibbsProbY.cpp -o cG_calcGibbsProbY.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c eigenMatMultInt.cpp -o eigenMatMultInt.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c matrixNorm.cpp -o matrixNorm.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c matrixSums.c -o matrixSums.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c perplexity.c -o perplexity.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o celda.dll tmp.def RcppExports.o cG_calcGibbsProbY.o eigenMatMultInt.o matrixNorm.o matrixSums.o perplexity.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/celda.buildbin-libdir/00LOCK-celda/00new/celda/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'celda'
    finding HTML links ... done
    appendCeldaList                         html  
    availableModels                         html  
    bestLogLikelihood-celdaModel-method     html  
    bestLogLikelihood                       html  
    celda                                   html  
    celdaCGGridSearchRes                    html  
    celdaCGMod                              html  
    celdaCGSim                              html  
    celdaCMod                               html  
    celdaCSim                               html  
    celdaGMod                               html  
    celdaGSim                               html  
    celdaGridSearch                         html  
    celdaHeatmap-celda_C-method             html  
    celdaHeatmap-celda_CG-method            html  
    celdaHeatmap-celda_G-method             html  
    celdaHeatmap                            html  
    celdaPerplexity-celdaList-method        html  
    celdaPerplexity                         html  
    celdaProbabilityMap-celda_C-method      html  
    celdaProbabilityMap-celda_CG-method     html  
    celdaProbabilityMap                     html  
    celdaTsne-celda_C-method                html  
    celdaTsne-celda_CG-method               html  
    celdaTsne-celda_G-method                html  
    celdaTsne                               html  
    celdaUmap-celda_C-method                html  
    celdaUmap-celda_CG-method               html  
    celdaUmap-celda_G-method                html  
    celdaUmap                               html  
    celda_C                                 html  
    celda_CG                                html  
    celda_G                                 html  
    clusterProbability-celda_C-method       html  
    clusterProbability-celda_CG-method      html  
    clusterProbability-celda_G-method       html  
    clusterProbability                      html  
    clusters-celdaModel-method              html  
    clusters                                html  
    compareCountMatrix                      html  
    contaminationSim                        html  
    countChecksum-celdaList-method          html  
    countChecksum                           html  
    decontX                                 html  
    differentialExpression                  html  
    distinctColors                          html  
    eigenMatMultInt                         html  
    factorizeMatrix-celda_C-method          html  
    factorizeMatrix-celda_CG-method         html  
    factorizeMatrix-celda_G-method          html  
    factorizeMatrix                         html  
    fastNormProp                            html  
    fastNormPropLog                         html  
    fastNormPropSqrt                        html  
    featureModuleLookup-celda_C-method      html  
    featureModuleLookup-celda_CG-method     html  
    featureModuleLookup-celda_G-method      html  
    featureModuleLookup                     html  
    featureModuleTable                      html  
    findMarkers                             html  
    geneSetEnrich                           html  
    getDecisions                            html  
    logLikelihood                           html  
    logLikelihoodHistory-celdaModel-method
                                            html  
    logLikelihoodHistory                    html  
    logLikelihoodcelda_C                    html  
    logLikelihoodcelda_CG                   html  
    logLikelihoodcelda_G                    html  
    matrixNames-celdaModel-method           html  
    matrixNames                             html  
    moduleHeatmap                           html  
    normalizeCounts                         html  
    params-celdaModel-method                html  
    params                                  html  
    perplexity-celda_C-method               html  
    perplexity-celda_CG-method              html  
    perplexity-celda_G-method               html  
    perplexity                              html  
    plotDendro                              html  
    plotDimReduceCluster                    html  
    plotDimReduceFeature                    html  
    plotDimReduceGrid                       html  
    plotDimReduceModule                     html  
    plotGridSearchPerplexity                html  
    plotGridSearchPerplexitycelda_C         html  
    plotGridSearchPerplexitycelda_CG        html  
    plotGridSearchPerplexitycelda_G         html  
    plotHeatmap                             html  
    recodeClusterY                          html  
    recodeClusterZ                          html  
    recursiveSplitCell                      html  
    recursiveSplitModule                    html  
    resList-celdaList-method                html  
    resList                                 html  
    resamplePerplexity                      html  
    runParams-celdaList-method              html  
    runParams                               html  
    sampleCells                             html  
    sampleLabel-celdaModel-method           html  
    sampleLabel                             html  
    selectBestModel                         html  
    semiPheatmap                            html  
    simulateCells                           html  
    simulateCellscelda_C                    html  
    simulateCellscelda_CG                   html  
    simulateCellscelda_G                    html  
    simulateContaminatedMatrix              html  
    subsetCeldaList                         html  
    topRank                                 html  
    violinPlot                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'celda' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c cG_calcGibbsProbY.cpp -o cG_calcGibbsProbY.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c eigenMatMultInt.cpp -o eigenMatMultInt.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c matrixNorm.cpp -o matrixNorm.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c matrixSums.c -o matrixSums.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c perplexity.c -o perplexity.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o celda.dll tmp.def RcppExports.o cG_calcGibbsProbY.o eigenMatMultInt.o matrixNorm.o matrixSums.o perplexity.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/celda.buildbin-libdir/celda/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'celda' as celda_1.2.4.zip
* DONE (celda)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'celda' successfully unpacked and MD5 sums checked