Paul J. McMurdie
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/biomformat |
| Branch: RELEASE_3_10 |
| Last Commit: f20af45 |
| Last Changed Date: 2019-10-29 13:09:31 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:25:49 -0400 (Wed, 15 Apr 2020).
| Package 167/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| biomformat 1.14.0 Paul J. McMurdie
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: biomformat |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/biomformat_1.14.0.tar.gz && rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomformat.buildbin-libdir biomformat_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL biomformat_1.14.0.zip && rm biomformat_1.14.0.tar.gz biomformat_1.14.0.zip |
| StartedAt: 2020-04-14 18:49:34 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 18:50:08 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 33.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/biomformat_1.14.0.tar.gz && rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomformat.buildbin-libdir biomformat_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL biomformat_1.14.0.zip && rm biomformat_1.14.0.tar.gz biomformat_1.14.0.zip
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install for i386
* installing *source* package 'biomformat' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'nrow' from package 'base' in package 'biomformat'
Creating a generic function for 'ncol' from package 'base' in package 'biomformat'
Creating a generic function for 'rownames' from package 'base' in package 'biomformat'
Creating a generic function for 'colnames' from package 'base' in package 'biomformat'
** help
*** installing help indices
converting help for package 'biomformat'
finding HTML links ... done
biom-class html
biom-methods html
finding level-2 HTML links ... done
biom-package html
biom_data-methods html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpay3ANR/R.INSTALL10ec5c847f6/biomformat/man/biom_data-methods.Rd:46: missing link 'plyr-package'
biom_shape-methods html
colnames-methods html
header-methods html
make_biom html
matrix_element_type-methods html
ncol-methods html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpay3ANR/R.INSTALL10ec5c847f6/biomformat/man/ncol-methods.Rd:6: file link 'ncol' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpay3ANR/R.INSTALL10ec5c847f6/biomformat/man/ncol-methods.Rd:19: file link 'ncol' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpay3ANR/R.INSTALL10ec5c847f6/biomformat/man/ncol-methods.Rd:31: file link 'ncol' in package 'base' does not exist and so has been treated as a topic
nrow-methods html
observation_metadata-methods html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpay3ANR/R.INSTALL10ec5c847f6/biomformat/man/observation_metadata-methods.Rd:30: missing link 'plyr-package'
read_biom html
read_hdf5_biom html
rownames-methods html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpay3ANR/R.INSTALL10ec5c847f6/biomformat/man/rownames-methods.Rd:6: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpay3ANR/R.INSTALL10ec5c847f6/biomformat/man/rownames-methods.Rd:19: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpay3ANR/R.INSTALL10ec5c847f6/biomformat/man/rownames-methods.Rd:31: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
sample_metadata-methods html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpay3ANR/R.INSTALL10ec5c847f6/biomformat/man/sample_metadata-methods.Rd:30: missing link 'plyr-package'
show-methods html
write_biom html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'biomformat' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biomformat' as biomformat_1.14.0.zip
* DONE (biomformat)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'biomformat' successfully unpacked and MD5 sums checked