Back to Multiple platform build/check report for BioC 3.10
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

BUILD report for BiocSklearn on tokay1

This page was generated on 2020-04-15 12:28:48 -0400 (Wed, 15 Apr 2020).

Package 160/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocSklearn 1.8.1
VJ Carey
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/BiocSklearn
Branch: RELEASE_3_10
Last Commit: 891f07a
Last Changed Date: 2020-03-25 20:56:20 -0400 (Wed, 25 Mar 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiocSklearn
Version: 1.8.1
Command: chmod a+r BiocSklearn -R && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data BiocSklearn
StartedAt: 2020-04-14 23:45:29 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 23:47:49 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 139.9 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r BiocSklearn -R && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data BiocSklearn
###
##############################################################################
##############################################################################


* checking for file 'BiocSklearn/DESCRIPTION' ... OK
* preparing 'BiocSklearn':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'BiocSklearn.Rmd' using rmarkdown
Quitting from lines 170-173 (BiocSklearn.Rmd) 
Error: processing vignette 'BiocSklearn.Rmd' failed with diagnostics:
RuntimeError: Evaluation error: Expecting a single string value: [type=environment; extent=2]..

Detailed traceback: 
  File "<string>", line 1, in <module>
  File "C:\Python27\lib\site-packages\h5py\_hl\files.py", line 408, in __init__
    swmr=swmr)
  File "C:\Python27\lib\site-packages\h5py\_hl\files.py", line 194, in make_fid
    "See the docs for details.", H5pyDeprecationWarning, stacklevel=3)
  File "C:/Python27\lib\warnings.py", line 33, in _show_warning
    file.write(formatwarning(message, category, filename, lineno, line))
  File "C:/Users/biocbuild/bbs-3.10-bioc/R/library/reticulate/python\rpytools\output.py", line 105, in write
    return self.handler(message)
  File "C:/Users/biocbuild/bbs-3.10-bioc/R/library/reticulate/python\rpytools\call.py", line 21, in python_function
    raise RuntimeError(res[kErrorKey])

--- failed re-building 'BiocSklearn.Rmd'

SUMMARY: processing the following file failed:
  'BiocSklearn.Rmd'

Error: Vignette re-building failed.
Execution halted