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INSTALL report for adSplit on tokay1

This page was generated on 2020-04-15 12:17:33 -0400 (Wed, 15 Apr 2020).

Package 20/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
adSplit 1.56.0
Claudio Lottaz
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/adSplit
Branch: RELEASE_3_10
Last Commit: 5f31deb
Last Changed Date: 2019-10-29 13:07:40 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: adSplit
Version: 1.56.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/adSplit_1.56.0.tar.gz && rm -rf adSplit.buildbin-libdir && mkdir adSplit.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=adSplit.buildbin-libdir adSplit_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL adSplit_1.56.0.zip && rm adSplit_1.56.0.tar.gz adSplit_1.56.0.zip
StartedAt: 2020-04-14 18:49:11 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:49:45 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 33.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/adSplit_1.56.0.tar.gz && rm -rf adSplit.buildbin-libdir && mkdir adSplit.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=adSplit.buildbin-libdir adSplit_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL adSplit_1.56.0.zip && rm adSplit_1.56.0.tar.gz adSplit_1.56.0.zip
###
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100 51292  100 51292    0     0  1161k      0 --:--:-- --:--:-- --:--:-- 1284k

install for i386

* installing *source* package 'adSplit' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c adSplit.cpp -o adSplit.o
adSplit.cpp: In function 'double tscore(double*, int, int, split&, isis_pars&)':
adSplit.cpp:256:77: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     throw Tomato(__LINE__, "tscore: internal error, shame on the programmer");
                                                                             ^
adSplit.cpp: In function 'void isis(char**, double*, int*, int*, int*, int*, int*, double*, int*)':
adSplit.cpp:469:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       throw Tomato(__LINE__, "isis() called with unknown function");
                                                                   ^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o adSplit.dll tmp.def adSplit.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/adSplit.buildbin-libdir/00LOCK-adSplit/00new/adSplit/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'adSplit'
    finding HTML links ... done
    adSplit-internal                        html  
    adSplit                                 html  
    diana2means                             html  
    drawRandomPS                            html  
    golubKEGGSplits                         html  
    hist.splitSet                           html  
    image.splitSet                          html  
    makeEID2PROBESenv                       html  
    print.split                             html  
    print.splitSet                          html  
    randomDiana2means                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'adSplit' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c adSplit.cpp -o adSplit.o
adSplit.cpp: In function 'double tscore(double*, int, int, split&, isis_pars&)':
adSplit.cpp:256:77: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     throw Tomato(__LINE__, "tscore: internal error, shame on the programmer");
                                                                             ^
adSplit.cpp: In function 'void isis(char**, double*, int*, int*, int*, int*, int*, double*, int*)':
adSplit.cpp:469:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       throw Tomato(__LINE__, "isis() called with unknown function");
                                                                   ^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o adSplit.dll tmp.def adSplit.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/adSplit.buildbin-libdir/adSplit/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'adSplit' as adSplit_1.56.0.zip
* DONE (adSplit)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'adSplit' successfully unpacked and MD5 sums checked