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INSTALL report for CAMERA on tokay1

This page was generated on 2020-04-15 12:18:45 -0400 (Wed, 15 Apr 2020).

Package 217/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CAMERA 1.42.0
Steffen Neumann
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/CAMERA
Branch: RELEASE_3_10
Last Commit: c99e379
Last Changed Date: 2019-10-29 13:08:04 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: CAMERA
Version: 1.42.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/CAMERA_1.42.0.tar.gz && rm -rf CAMERA.buildbin-libdir && mkdir CAMERA.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAMERA.buildbin-libdir CAMERA_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL CAMERA_1.42.0.zip && rm CAMERA_1.42.0.tar.gz CAMERA_1.42.0.zip
StartedAt: 2020-04-14 19:49:48 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 19:52:01 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 133.3 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/CAMERA_1.42.0.tar.gz && rm -rf CAMERA.buildbin-libdir && mkdir CAMERA.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAMERA.buildbin-libdir CAMERA_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL CAMERA_1.42.0.zip && rm CAMERA_1.42.0.tar.gz CAMERA_1.42.0.zip
###
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100 1799k  100 1799k    0     0  7374k      0 --:--:-- --:--:-- --:--:-- 7467k

install for i386

* installing *source* package 'CAMERA' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c fastMatch.c -o fastMatch.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o CAMERA.dll tmp.def fastMatch.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/CAMERA.buildbin-libdir/00LOCK-CAMERA/00new/CAMERA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
** help
*** installing help indices
  converting help for package 'CAMERA'
    finding HTML links ... done
    annotate-methods                        html  
    annotateDiffreport                      html  
    finding level-2 HTML links ... done

    calcCaS-methods                         html  
    calcCiS-methods                         html  
    calcIsotopes-methods                    html  
    calcPC-methods                          html  
    calcPC.hcs-methods                      html  
    calcPC.lpc-methods                      html  
    cleanParallel                           html  
    combinexsAnnos                          html  
    compoundLibraries                       html  
    compoundQuantiles-class                 html  
    compoundQuantiles                       html  
    findAdducts-methods                     html  
    findIsotopes-methods                    html  
    findIsotopesWithValidation-methods      html  
    findKendrickMasses                      html  
    findNeutralLoss                         html  
    findNeutralLossSpecs                    html  
    getAllPeakEICs-methods                  html  
    getAtomCount-compoundQuantiles-method   html  
    getIsotopeCluster                       html  
    getIsotopeProportion-compoundQuantiles-method
                                            html  
    getPeaklist-methods                     html  
    getReducedPeaklist-methods              html  
    getpspectra                             html  
    groupCorr-methods                       html  
    groupDen-methods                        html  
    groupFWHM-methods                       html  
    massWindowSizes                         html  
    mm14                                    html  
    plotEIC.xsAnnotate                      html  
    plotPsSpectrum.xsAnnotate               html  
    psDist-methods                          html  
    pspec2metfrag                           html  
    ruleSet-class                           html  
    xsAnnotate-class                        html  
    xsAnnotate                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CAMERA' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c fastMatch.c -o fastMatch.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o CAMERA.dll tmp.def fastMatch.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/CAMERA.buildbin-libdir/CAMERA/libs/x64
** testing if installed package can be loaded
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
* MD5 sums
packaged installation of 'CAMERA' as CAMERA_1.42.0.zip
* DONE (CAMERA)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'CAMERA' successfully unpacked and MD5 sums checked