Package: AssessORF

Version: 1.4.0

Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AssessORF.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings AssessORF_1.4.0.tar.gz

StartedAt: 2020-04-15 01:22:08 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 01:25:56 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 227.5 seconds

RetCode: 0

Status:  OK

CheckDir: AssessORF.Rcheck

Warnings: 0

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### Running command:
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###   C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AssessORF.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings AssessORF_1.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/AssessORF.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AssessORF/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AssessORF' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AssessORF' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
MapAssessmentData 24.86   5.70   32.31
plot.Assessment   13.73   2.33   16.06
AssessGenes       11.58   0.22   11.92
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
MapAssessmentData 20.01   6.14   26.16
AssessGenes       11.73   0.11   11.84
plot.Assessment    9.36   2.48   11.85
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/AssessORF_1.4.0.tar.gz && rm -rf AssessORF.buildbin-libdir && mkdir AssessORF.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AssessORF.buildbin-libdir AssessORF_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL AssessORF_1.4.0.zip && rm AssessORF_1.4.0.tar.gz AssessORF_1.4.0.zip
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100 4548k  100 4548k    0     0  44.9M      0 --:--:-- --:--:-- --:--:-- 46.7M

install for i386

* installing *source* package 'AssessORF' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'AssessORF'
    finding HTML links ... done
    AssessGenes                             html  
    Assessment-class                        html  
    CompareAssessmentResults                html  
    MapAssessmentData                       html  
    ScoreAssessmentResults                  html  
    as.matrix.Assessment                    html  
    mosaicplot.Assessment                   html  
    plot.Assessment                         html  
    print.Assessment                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'AssessORF' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AssessORF' as AssessORF_1.4.0.zip
* DONE (AssessORF)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'AssessORF' successfully unpacked and MD5 sums checked