Back to Multiple platform build/check report for BioC 3.10
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for ADaCGH2 on tokay1

This page was generated on 2020-04-15 12:19:32 -0400 (Wed, 15 Apr 2020).

Package 15/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ADaCGH2 2.26.0
Ramon Diaz-Uriarte
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/ADaCGH2
Branch: RELEASE_3_10
Last Commit: e93a6c9
Last Changed Date: 2019-10-29 13:08:18 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ADaCGH2
Version: 2.26.0
Command: rm -rf ADaCGH2.buildbin-libdir && mkdir ADaCGH2.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ADaCGH2.buildbin-libdir ADaCGH2_2.26.0.tar.gz
StartedAt: 2020-04-15 08:07:22 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 08:10:22 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 180.7 seconds
RetCode: 0
Status:  OK  
PackageFile: ADaCGH2_2.26.0.zip
PackageFileSize: 1.181 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ADaCGH2.buildbin-libdir && mkdir ADaCGH2.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ADaCGH2.buildbin-libdir ADaCGH2_2.26.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'ADaCGH2' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c r_haarseg.c -o r_haarseg.o
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:65:12: warning: unused variable 'totalNorm' [-Wunused-variable]
     double totalNorm;
            ^
r_haarseg.c: In function 'ad_FindLocalPeaks':
r_haarseg.c:152:8: warning: "/*" within comment [-Wcomment]
       }/* for j */
 ^
r_haarseg.c:176:8: warning: "/*" within comment [-Wcomment]
       }/* for j */
 ^
r_haarseg.c:128:9: warning: unused variable 'j' [-Wunused-variable]
   int k,j;
         ^
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:97:27: warning: 'highNonNormed' may be used uninitialized in this function [-Wmaybe-uninitialized]
             highNonNormed += signal[highEnd]*weight[highEnd] - signal[k-1]*weight[k-1]; 
                           ^
r_haarseg.c:96:26: warning: 'lowNonNormed' may be used uninitialized in this function [-Wmaybe-uninitialized]
             lowNonNormed += signal[lowEnd]*weight[lowEnd] - signal[k-1]*weight[k-1];
                          ^
r_haarseg.c:99:27: warning: 'highWeightSum' may be used uninitialized in this function [-Wmaybe-uninitialized]
             highWeightSum += weight[highEnd] - weight[k-1];
                           ^
r_haarseg.c:98:26: warning: 'lowWeightSum' may be used uninitialized in this function [-Wmaybe-uninitialized]
             lowWeightSum += weight[k-1] - weight[lowEnd];
                          ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o ADaCGH2.dll tmp.def init.o r_haarseg.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/ADaCGH2.buildbin-libdir/00LOCK-ADaCGH2/00new/ADaCGH2/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ADaCGH2'
    finding HTML links ... done
    cutFile                                 html  
    inputEx                                 html  
    inputToADaCGH                           html  
    finding level-2 HTML links ... done

    outputToCGHregions                      html  
    pChromPlot                              html  
    pSegment                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ADaCGH2' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c r_haarseg.c -o r_haarseg.o
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:65:12: warning: unused variable 'totalNorm' [-Wunused-variable]
     double totalNorm;
            ^
r_haarseg.c: In function 'ad_FindLocalPeaks':
r_haarseg.c:152:8: warning: "/*" within comment [-Wcomment]
       }/* for j */
 ^
r_haarseg.c:176:8: warning: "/*" within comment [-Wcomment]
       }/* for j */
 ^
r_haarseg.c:128:9: warning: unused variable 'j' [-Wunused-variable]
   int k,j;
         ^
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:97:27: warning: 'highNonNormed' may be used uninitialized in this function [-Wmaybe-uninitialized]
             highNonNormed += signal[highEnd]*weight[highEnd] - signal[k-1]*weight[k-1]; 
                           ^
r_haarseg.c:96:26: warning: 'lowNonNormed' may be used uninitialized in this function [-Wmaybe-uninitialized]
             lowNonNormed += signal[lowEnd]*weight[lowEnd] - signal[k-1]*weight[k-1];
                          ^
r_haarseg.c:99:27: warning: 'highWeightSum' may be used uninitialized in this function [-Wmaybe-uninitialized]
             highWeightSum += weight[highEnd] - weight[k-1];
                           ^
r_haarseg.c:98:26: warning: 'lowWeightSum' may be used uninitialized in this function [-Wmaybe-uninitialized]
             lowWeightSum += weight[k-1] - weight[lowEnd];
                          ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o ADaCGH2.dll tmp.def init.o r_haarseg.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/ADaCGH2.buildbin-libdir/ADaCGH2/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ADaCGH2' as ADaCGH2_2.26.0.zip
* DONE (ADaCGH2)