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BioC experimental data: CHECK report for pRolocdata on petty

This page was generated on 2015-10-07 16:21:46 -0700 (Wed, 07 Oct 2015).

Package 184/241HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pRolocdata 1.6.0
Laurent Gatto
Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/pRolocdata
Last Changed Rev: 3279 / Revision: 3442
Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ] OK 

Summary

Package: pRolocdata
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings pRolocdata_1.6.0.tar.gz
StartedAt: 2015-10-07 09:42:56 -0700 (Wed, 07 Oct 2015)
EndedAt: 2015-10-07 09:45:42 -0700 (Wed, 07 Oct 2015)
EllapsedTime: 165.5 seconds
RetCode: 0
Status:  OK 
CheckDir: pRolocdata.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings pRolocdata_1.6.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/pRolocdata.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pRolocdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pRolocdata’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pRolocdata’ can be installed ... [13s/14s] OK
* checking installed package size ... NOTE
  installed size is 20.4Mb
  sub-directories of 1Mb or more:
    data      6.3Mb
    extdata  13.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [25s/26s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
fabre2015 6.630  0.222   7.832
groen2014 5.998  0.109   6.107
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/pRolocdata.Rcheck/00check.log’
for details.


pRolocdata.Rcheck/00install.out:

* installing *source* package ‘pRolocdata’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
* DONE (pRolocdata)

pRolocdata.Rcheck/pRolocdata-Ex.timings:

nameusersystemelapsed
E14TG2a0.0430.0110.054
andy20110.0870.0290.117
at_chloro0.1720.0130.185
dunkley20060.0200.0140.033
fabre20156.6300.2227.832
foster20060.0490.0150.063
groen20145.9980.1096.107
hall20090.6270.0280.656
havugimana20120.6190.0210.639
kirkwood20130.0590.0040.244
kristensen20120.0330.0020.035
nikolovski20121.2560.0501.329
nikolovski20140.7800.0130.795
pRolocdata0.0110.0080.052
pRolocmetadata0.0280.0050.034
tan20090.0270.0030.030
trotter20100.7470.0240.795