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BioC experimental data: CHECK report for pRolocdata on moscato2

This page was generated on 2015-10-07 16:21:19 -0700 (Wed, 07 Oct 2015).

Package 184/241HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pRolocdata 1.6.0
Laurent Gatto
Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/pRolocdata
Last Changed Rev: 3279 / Revision: 3442
Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 

Summary

Package: pRolocdata
Version: 1.6.0
Command: rm -rf pRolocdata.buildbin-libdir pRolocdata.Rcheck && mkdir pRolocdata.buildbin-libdir pRolocdata.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pRolocdata.buildbin-libdir pRolocdata_1.6.0.tar.gz >pRolocdata.Rcheck\00install.out 2>&1 && cp pRolocdata.Rcheck\00install.out pRolocdata-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=pRolocdata.buildbin-libdir --install="check:pRolocdata-install.out" --force-multiarch --no-vignettes --timings pRolocdata_1.6.0.tar.gz
StartedAt: 2015-10-07 11:34:43 -0700 (Wed, 07 Oct 2015)
EndedAt: 2015-10-07 11:38:53 -0700 (Wed, 07 Oct 2015)
EllapsedTime: 250.3 seconds
RetCode: 0
Status:  OK  
CheckDir: pRolocdata.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf pRolocdata.buildbin-libdir pRolocdata.Rcheck && mkdir pRolocdata.buildbin-libdir pRolocdata.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pRolocdata.buildbin-libdir pRolocdata_1.6.0.tar.gz >pRolocdata.Rcheck\00install.out 2>&1 && cp pRolocdata.Rcheck\00install.out pRolocdata-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=pRolocdata.buildbin-libdir --install="check:pRolocdata-install.out" --force-multiarch --no-vignettes --timings pRolocdata_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.1-data-experiment/meat/pRolocdata.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pRolocdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pRolocdata' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pRolocdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 20.4Mb
  sub-directories of 1Mb or more:
    data      6.3Mb
    extdata  13.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [23s] OK
Examples with CPU or elapsed time > 5s
          user system elapsed
fabre2015 4.46   0.22   11.43
** running examples for arch 'x64' ... [26s] OK
Examples with CPU or elapsed time > 5s
          user system elapsed
groen2014 5.68   0.05    5.72
fabre2015 5.29   0.17    7.59
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'E:/biocbld/bbs-3.1-data-experiment/meat/pRolocdata.Rcheck/00check.log'
for details.


pRolocdata.Rcheck/00install.out:


install for i386

* installing *source* package 'pRolocdata' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'

install for x64

* installing *source* package 'pRolocdata' ...
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
* MD5 sums
packaged installation of 'pRolocdata' as pRolocdata_1.6.0.zip
* DONE (pRolocdata)

pRolocdata.Rcheck/examples_i386/pRolocdata-Ex.timings:

nameusersystemelapsed
E14TG2a0.040.020.04
andy20110.210.010.24
at_chloro0.110.020.12
dunkley20060.020.000.02
fabre2015 4.46 0.2211.43
foster20060.040.000.05
groen20143.930.003.93
hall20090.270.000.26
havugimana20120.430.000.42
kirkwood20130.060.000.06
kristensen20120.030.000.03
nikolovski20120.750.030.78
nikolovski20140.420.020.44
pRolocdata000
pRolocmetadata0.030.000.03
tan20090.030.000.03
trotter20100.390.010.40

pRolocdata.Rcheck/examples_x64/pRolocdata-Ex.timings:

nameusersystemelapsed
E14TG2a0.040.000.05
andy20110.080.000.08
at_chloro0.140.010.15
dunkley20060.030.000.03
fabre20155.290.177.59
foster20060.040.000.05
groen20145.680.055.72
hall20090.320.000.32
havugimana20120.660.020.67
kirkwood20130.060.000.06
kristensen20120.030.000.04
nikolovski20120.920.000.92
nikolovski20140.430.030.47
pRolocdata0.010.000.01
pRolocmetadata0.000.010.02
tan20090.020.020.03
trotter20100.400.010.42