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BioC experimental data: CHECK report for miRNATarget on petty

This page was generated on 2015-10-07 16:21:44 -0700 (Wed, 07 Oct 2015).

Package 157/241HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRNATarget 1.6.0
Y-h. Taguchi
Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/miRNATarget
Last Changed Rev: 3279 / Revision: 3442
Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ OK ] OK 

Summary

Package: miRNATarget
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings miRNATarget_1.6.0.tar.gz
StartedAt: 2015-10-07 09:37:27 -0700 (Wed, 07 Oct 2015)
EndedAt: 2015-10-07 09:38:40 -0700 (Wed, 07 Oct 2015)
EllapsedTime: 72.5 seconds
RetCode: 0
Status:  OK 
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings miRNATarget_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... [4s/6s] OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [19s/20s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.


miRNATarget.Rcheck/00install.out:

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

miRNATarget.Rcheck/miRNATarget-Ex.timings:

nameusersystemelapsed
HS_conv_id0.0250.0030.028
HS_refseq_to_affy_hc_g1100.0080.0010.008
HS_refseq_to_affy_hg_focus0.0320.0020.033
HS_refseq_to_affy_hg_u133_plus_20.0920.0040.096
HS_refseq_to_affy_hg_u133a0.0570.0010.059
HS_refseq_to_affy_hg_u133a_20.0720.0000.073
HS_refseq_to_affy_hg_u133b0.0320.0000.033
HS_refseq_to_affy_hg_u95a0.0360.0010.037
HS_refseq_to_affy_hg_u95av20.0370.0020.038
HS_refseq_to_affy_hg_u95b0.0450.0010.046
HS_refseq_to_affy_hg_u95c0.0160.0010.016
HS_refseq_to_affy_hg_u95d0.0100.0010.011
HS_refseq_to_affy_hg_u95e0.0160.0000.016
HS_refseq_to_affy_huex_1_0_st_v21.6270.0451.672
HS_refseq_to_affy_hugene_1_0_st_v10.0730.0020.075
HS_refseq_to_affy_hugenefl0.0210.0010.022
HS_refseq_to_affy_u133_x3p0.1050.0030.107
HS_refseq_to_agilent_cgh_44b0.0220.0010.023
HS_refseq_to_agilent_wholegenome0.1130.0210.133
HS_refseq_to_canonical_transcript_stable_id0.0990.0190.118
HS_refseq_to_ccds0.0600.0030.063
HS_refseq_to_codelink0.0590.0020.061
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0040.0010.005
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0040.0010.004
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0040.0000.005
HS_refseq_to_embl1.1990.0251.226
HS_refseq_to_ensembl_exon_id0.0040.0010.004
HS_refseq_to_ensembl_gene_id0.0790.0010.079
HS_refseq_to_ensembl_peptide_id0.0660.0010.067
HS_refseq_to_ensembl_transcript_id0.0850.0020.087
HS_refseq_to_entrezgene0.0770.0010.078
HS_refseq_to_hgnc_id0.0680.0010.069
HS_refseq_to_hgnc_symbol0.0740.0020.076
HS_refseq_to_hgnc_transcript_name0.0840.0010.086
HS_refseq_to_illumina_humanht_120.0850.0020.087
HS_refseq_to_illumina_humanwg_6_v10.2110.0020.212
HS_refseq_to_illumina_humanwg_6_v20.0650.0000.066
HS_refseq_to_illumina_humanwg_6_v30.0780.0010.079
HS_refseq_to_interpro0.1940.0030.197
HS_refseq_to_ipi0.1640.0080.171
HS_refseq_to_merops0.0080.0000.008
HS_refseq_to_pdb0.3640.0050.369
HS_refseq_to_pfam0.0980.0010.099
HS_refseq_to_phalanx_onearray0.0580.0010.059
HS_refseq_to_protein_id1.3390.0101.349
HS_refseq_to_refseq_dna0.0830.0040.087
HS_refseq_to_refseq_genomic0.0030.0000.003
HS_refseq_to_refseq_peptide0.1440.0010.145
HS_refseq_to_rfam0.0040.0000.005
HS_refseq_to_rfam_gene_name0.0020.0010.003
HS_refseq_to_rfam_transcript_name0.0030.0000.003
HS_refseq_to_smart0.0590.0010.059
HS_refseq_to_tigrfam0.0090.0000.009
HS_refseq_to_ucsc0.1440.0020.147
HS_refseq_to_unigene0.1050.0020.109
HS_refseq_to_uniprot_genename0.0680.0010.069
HS_refseq_to_uniprot_genename_transcript_name0.0030.0010.004
HS_refseq_to_uniprot_sptrembl0.0030.0000.004
HS_refseq_to_uniprot_swissprot0.0030.0000.004
HS_refseq_to_uniprot_swissprot_accession0.0040.0010.004
HS_refseq_to_wikigene_id0.0040.0010.004
HS_refseq_to_wikigene_name0.2740.0040.278
MM_conv_id0.0040.0000.005
MM_refseq_to_affy_mg_u74a0.0210.0000.022
MM_refseq_to_affy_mg_u74av20.0210.0000.022
MM_refseq_to_affy_mg_u74b0.0170.0000.017
MM_refseq_to_affy_mg_u74bv20.0170.0010.018
MM_refseq_to_affy_mg_u74c0.0060.0010.007
MM_refseq_to_affy_mg_u74cv20.0130.0010.014
MM_refseq_to_affy_moe430a0.0420.0000.042
MM_refseq_to_affy_moe430b0.0210.0000.021
MM_refseq_to_affy_moex_1_0_st_v10.5260.0050.531
MM_refseq_to_affy_mogene_1_0_st_v10.0590.0020.061
MM_refseq_to_affy_mouse430_20.0710.0010.072
MM_refseq_to_affy_mouse430a_20.0470.0010.048
MM_refseq_to_affy_mu11ksuba0.0190.0010.020
MM_refseq_to_affy_mu11ksubb0.0110.0000.012
MM_refseq_to_agilent_wholegenome0.0790.0050.085
MM_refseq_to_canonical_transcript_stable_id0.0780.0060.083
MM_refseq_to_ccds0.1140.0040.118
MM_refseq_to_codelink0.0420.0010.042
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0030.0010.004
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0040.0010.005
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0040.0000.005
MM_refseq_to_embl0.4110.0050.417
MM_refseq_to_ensembl_exon_id0.0030.0010.005
MM_refseq_to_ensembl_gene_id0.0520.0010.053
MM_refseq_to_ensembl_peptide_id0.0520.0020.054
MM_refseq_to_ensembl_transcript_id0.0570.0020.059
MM_refseq_to_entrezgene0.0580.0020.059
MM_refseq_to_fantom0.3030.0100.312
MM_refseq_to_illumina_mousewg_6_v10.2440.0020.246
MM_refseq_to_illumina_mousewg_6_v20.0680.0010.069
MM_refseq_to_interpro0.1470.0030.149
MM_refseq_to_ipi0.0020.0010.003
MM_refseq_to_merops0.0050.0000.006
MM_refseq_to_mgi_id0.0490.0010.050
MM_refseq_to_mgi_symbol0.0480.0010.050
MM_refseq_to_mgi_transcript_name0.0510.0010.052
MM_refseq_to_pdb0.0800.0020.081
MM_refseq_to_pfam0.0860.0010.086
MM_refseq_to_phalanx_onearray0.0550.0010.055
MM_refseq_to_protein_id0.4670.0060.473
MM_refseq_to_refseq_dna0.3370.0250.363
MM_refseq_to_refseq_peptide0.0940.0020.096
MM_refseq_to_rfam0.0040.0000.004
MM_refseq_to_rfam_gene_name0.0030.0000.003
MM_refseq_to_rfam_transcript_name0.0030.0010.003
MM_refseq_to_smart0.0390.0010.039
MM_refseq_to_tigrfam0.0070.0000.007
MM_refseq_to_ucsc0.0460.0010.046
MM_refseq_to_unigene0.0630.0010.063
MM_refseq_to_uniprot_genename0.0440.0010.044
MM_refseq_to_uniprot_genename_transcript_name0.0040.0010.004
MM_refseq_to_uniprot_sptrembl0.0040.0000.004
MM_refseq_to_uniprot_swissprot0.0030.0010.004
MM_refseq_to_uniprot_swissprot_accession0.0040.0010.004
MM_refseq_to_wikigene_id0.0030.0000.003
MM_refseq_to_wikigene_name0.0460.0010.047
TBL21.2890.1381.427
TBL2_HS2.0910.2862.378
TBL2_MM1.1720.1831.355
conv_id0.0040.0000.004
id_conv0.0450.0010.047