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BioC experimental data: CHECK report for geneLenDataBase on zin2

This page was generated on 2015-10-07 16:20:52 -0700 (Wed, 07 Oct 2015).

Package 95/241HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.4.0
Nadia Davidson
Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/geneLenDataBase
Last Changed Rev: 3279 / Revision: 3442
Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: geneLenDataBase
Version: 1.4.0
Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.4.0.tar.gz
StartedAt: 2015-10-07 09:51:58 -0700 (Wed, 07 Oct 2015)
EndedAt: 2015-10-07 10:03:17 -0700 (Wed, 07 Oct 2015)
EllapsedTime: 679.4 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.1-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... [14s/31s] OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [65s/159s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.1-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.


geneLenDataBase.Rcheck/00install.out:

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
* DONE (geneLenDataBase)

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0830.0000.215
anoCar1.genscan.LENGTH0.0900.0110.159
anoCar1.xenoRefGene.LENGTH1.0990.0043.307
anoGam1.ensGene.LENGTH0.1600.0170.521
anoGam1.geneid.LENGTH0.0560.0100.210
anoGam1.genscan.LENGTH0.0460.0140.166
apiMel1.genscan.LENGTH0.0440.0070.151
apiMel2.ensGene.LENGTH0.1010.0070.281
apiMel2.geneid.LENGTH0.0520.0180.208
apiMel2.genscan.LENGTH0.0430.0030.151
aplCal1.xenoRefGene.LENGTH0.5570.0081.786
bosTau2.geneSymbol.LENGTH0.0620.0030.276
bosTau2.geneid.LENGTH0.2650.0040.540
bosTau2.genscan.LENGTH0.0910.0140.318
bosTau2.refGene.LENGTH0.0930.0170.386
bosTau2.sgpGene.LENGTH0.1130.0000.276
bosTau3.ensGene.LENGTH0.1900.0100.604
bosTau3.geneSymbol.LENGTH0.0440.0110.143
bosTau3.geneid.LENGTH0.4810.0040.856
bosTau3.genscan.LENGTH0.0720.0040.158
bosTau3.refGene.LENGTH0.0400.0110.131
bosTau3.sgpGene.LENGTH0.1020.0140.349
bosTau4.ensGene.LENGTH0.1070.0070.197
bosTau4.geneSymbol.LENGTH0.0330.0180.116
bosTau4.genscan.LENGTH0.0720.0000.073
bosTau4.nscanGene.LENGTH0.0320.0100.054
bosTau4.refGene.LENGTH0.0500.0180.147
braFlo1.xenoRefGene.LENGTH0.4410.0041.313
caeJap1.xenoRefGene.LENGTH0.4040.0050.976
caePb1.xenoRefGene.LENGTH0.7600.0011.386
caePb2.xenoRefGene.LENGTH0.4940.0001.534
caeRem2.xenoRefGene.LENGTH0.4760.0001.311
caeRem3.xenoRefGene.LENGTH0.4360.0001.220
calJac1.genscan.LENGTH0.1010.0020.226
calJac1.nscanGene.LENGTH0.1320.0000.224
calJac1.xenoRefGene.LENGTH0.8560.0011.834
canFam1.ensGene.LENGTH0.1180.0030.333
canFam1.geneSymbol.LENGTH0.0080.0000.027
canFam1.genscan.LENGTH0.0620.0040.066
canFam1.nscanGene.LENGTH0.1330.0000.197
canFam1.refGene.LENGTH0.0070.0000.028
canFam1.xenoRefGene.LENGTH0.6890.0002.159
canFam2.ensGene.LENGTH0.1100.0140.343
canFam2.geneSymbol.LENGTH0.0040.0040.021
canFam2.genscan.LENGTH0.0600.0030.197
canFam2.nscanGene.LENGTH0.0710.0000.269
canFam2.refGene.LENGTH0.0070.0000.015
canFam2.xenoRefGene.LENGTH0.7330.0002.127
cavPor3.ensGene.LENGTH0.1200.0080.464
cavPor3.genscan.LENGTH0.1050.0030.394
cavPor3.nscanGene.LENGTH0.1180.0070.440
cavPor3.xenoRefGene.LENGTH0.7510.0001.960
cb1.xenoRefGene.LENGTH0.4280.0000.834
cb3.xenoRefGene.LENGTH0.6740.0011.565
ce2.geneSymbol.LENGTH0.0800.0210.210
ce2.geneid.LENGTH0.0590.0000.188
ce2.refGene.LENGTH0.0750.0210.146
ce4.geneSymbol.LENGTH0.0860.0140.133
ce4.refGene.LENGTH0.0810.0140.127
ce4.xenoRefGene.LENGTH0.0770.0000.139
ce6.ensGene.LENGTH0.1040.0000.302
ce6.geneSymbol.LENGTH0.0930.0150.329
ce6.refGene.LENGTH0.0800.0210.305
ce6.xenoRefGene.LENGTH0.0870.0000.262
ci1.geneSymbol.LENGTH0.0040.0040.028
ci1.refGene.LENGTH0.0070.0000.023
ci1.xenoRefGene.LENGTH0.1970.0000.598
ci2.ensGene.LENGTH0.0620.0040.191
ci2.geneSymbol.LENGTH0.0070.0000.028
ci2.refGene.LENGTH0.0070.0000.012
ci2.xenoRefGene.LENGTH0.3030.0000.885
danRer3.ensGene.LENGTH0.1560.0100.311
danRer3.geneSymbol.LENGTH0.0570.0210.128
danRer3.refGene.LENGTH0.0640.0140.146
danRer4.ensGene.LENGTH0.1310.0000.218
danRer4.geneSymbol.LENGTH0.0660.0140.144
danRer4.genscan.LENGTH0.0640.0000.087
danRer4.nscanGene.LENGTH0.0870.0250.317
danRer4.refGene.LENGTH0.0690.0130.294
danRer5.ensGene.LENGTH0.1510.0020.558
danRer5.geneSymbol.LENGTH0.0590.0170.203
danRer5.refGene.LENGTH0.0540.0180.120
danRer5.vegaGene.LENGTH0.0620.0100.192
danRer5.vegaPseudoGene.LENGTH0.0040.0000.004
danRer6.ensGene.LENGTH0.1920.0130.405
danRer6.geneSymbol.LENGTH0.0740.0170.311
danRer6.refGene.LENGTH0.0560.0240.285
danRer6.xenoRefGene.LENGTH0.6020.0001.659
dm1.geneSymbol.LENGTH0.1590.0460.495
dm1.genscan.LENGTH0.0300.0060.134
dm1.refGene.LENGTH0.0590.0310.308
dm2.geneSymbol.LENGTH0.0860.0130.314
dm2.geneid.LENGTH0.0530.0030.138
dm2.genscan.LENGTH0.0260.0110.076
dm2.nscanGene.LENGTH0.0550.0000.183
dm2.refGene.LENGTH0.0680.0240.340
dm3.geneSymbol.LENGTH0.0750.0000.236
dm3.nscanPasaGene.LENGTH0.0540.0250.265
dm3.refGene.LENGTH0.0680.0000.197
dp2.genscan.LENGTH0.0380.0070.179
dp2.xenoRefGene.LENGTH0.2540.0010.766
dp3.geneid.LENGTH0.0500.0140.178
dp3.genscan.LENGTH0.0790.0140.253
dp3.xenoRefGene.LENGTH0.1300.0240.450
droAna1.geneid.LENGTH0.0660.0070.123
droAna1.genscan.LENGTH0.0250.0000.064
droAna1.xenoRefGene.LENGTH0.2270.0050.712
droAna2.genscan.LENGTH0.0520.0000.128
droAna2.xenoRefGene.LENGTH0.3960.0091.391
droEre1.genscan.LENGTH0.0420.0030.167
droEre1.xenoRefGene.LENGTH0.4070.0041.186
droGri1.genscan.LENGTH0.0490.0070.131
droGri1.xenoRefGene.LENGTH0.3140.0030.834
droMoj1.geneid.LENGTH0.4190.0121.055
droMoj1.genscan.LENGTH0.0520.0010.104
droMoj1.xenoRefGene.LENGTH0.2160.0080.513
droMoj2.genscan.LENGTH0.0410.0070.156
droMoj2.xenoRefGene.LENGTH0.2840.0010.834
droPer1.genscan.LENGTH0.0390.0170.102
droPer1.xenoRefGene.LENGTH0.2600.0050.475
droSec1.genscan.LENGTH0.0320.0110.083
droSec1.xenoRefGene.LENGTH0.3240.0010.847
droSim1.geneid.LENGTH0.0470.0110.132
droSim1.genscan.LENGTH0.0280.0070.035
droSim1.xenoRefGene.LENGTH0.2420.0040.754
droVir1.geneid.LENGTH0.1080.0000.373
droVir1.genscan.LENGTH0.0480.0110.191
droVir1.xenoRefGene.LENGTH0.2840.0010.807
droVir2.genscan.LENGTH0.0460.0040.122
droVir2.xenoRefGene.LENGTH0.2920.0080.879
droYak1.geneid.LENGTH0.0460.0250.143
droYak1.genscan.LENGTH0.0270.0180.096
droYak1.xenoRefGene.LENGTH0.2700.0040.411
droYak2.genscan.LENGTH0.0270.0140.049
droYak2.xenoRefGene.LENGTH0.2980.0020.766
equCab1.geneSymbol.LENGTH0.0070.0000.007
equCab1.geneid.LENGTH0.0880.0110.144
equCab1.nscanGene.LENGTH0.0550.0070.076
equCab1.refGene.LENGTH0.0070.0000.007
equCab1.sgpGene.LENGTH0.0720.0040.141
equCab2.ensGene.LENGTH0.1220.0110.407
equCab2.geneSymbol.LENGTH0.0100.0000.026
equCab2.nscanGene.LENGTH0.1120.0180.359
equCab2.refGene.LENGTH0.0070.0030.028
equCab2.xenoRefGene.LENGTH0.6630.0051.745
felCat3.ensGene.LENGTH0.1710.0030.489
felCat3.geneSymbol.LENGTH0.0050.0000.014
felCat3.geneid.LENGTH0.8400.0052.092
felCat3.genscan.LENGTH0.1830.0140.592
felCat3.nscanGene.LENGTH0.1810.0140.550
felCat3.refGene.LENGTH0.0050.0000.022
felCat3.sgpGene.LENGTH0.1420.0010.441
felCat3.xenoRefGene.LENGTH1.5650.0093.864
fr1.ensGene.LENGTH0.0730.0100.211
fr1.genscan.LENGTH0.0600.0000.135
fr2.ensGene.LENGTH0.1430.0150.310
galGal2.ensGene.LENGTH0.1040.0000.374
galGal2.geneSymbol.LENGTH0.0260.0000.078
galGal2.geneid.LENGTH0.0530.0050.216
galGal2.genscan.LENGTH0.0450.0310.248
galGal2.refGene.LENGTH0.0180.0030.025
galGal2.sgpGene.LENGTH0.0500.0210.135
galGal3.ensGene.LENGTH0.1460.0080.195
galGal3.geneSymbol.LENGTH0.0160.0070.023
galGal3.genscan.LENGTH0.0510.0180.076
galGal3.nscanGene.LENGTH0.0690.0000.095
galGal3.refGene.LENGTH0.0140.0070.021
galGal3.xenoRefGene.LENGTH0.7830.0021.576
gasAcu1.ensGene.LENGTH0.0970.0100.233
gasAcu1.nscanGene.LENGTH0.1090.0040.264
hg16.acembly.LENGTH0.3840.0000.895
hg16.ensGene.LENGTH0.0880.0060.356
hg16.exoniphy.LENGTH0.3350.0000.825
hg16.geneSymbol.LENGTH0.1080.0060.213
hg16.geneid.LENGTH0.0590.0180.279
hg16.genscan.LENGTH0.0750.0000.309
hg16.knownGene.LENGTH0.1940.0070.617
hg16.refGene.LENGTH0.1080.0040.335
hg16.sgpGene.LENGTH0.2030.0000.327
hg17.acembly.LENGTH1.0030.0072.040
hg17.acescan.LENGTH0.0140.0000.031
hg17.ccdsGene.LENGTH0.0260.0060.111
hg17.ensGene.LENGTH0.1170.0150.303
hg17.exoniphy.LENGTH0.3880.0001.046
hg17.geneSymbol.LENGTH0.1060.0030.273
hg17.geneid.LENGTH0.0780.0040.164
hg17.genscan.LENGTH0.0660.0040.228
hg17.knownGene.LENGTH0.2090.0040.673
hg17.refGene.LENGTH0.1010.0000.165
hg17.sgpGene.LENGTH0.0700.0110.113
hg17.vegaGene.LENGTH0.0460.0070.070
hg17.vegaPseudoGene.LENGTH0.0210.0030.036
hg17.xenoRefGene.LENGTH0.2390.0000.802
hg18.acembly.LENGTH0.7880.0112.364
hg18.acescan.LENGTH0.0110.0030.031
hg18.ccdsGene.LENGTH0.3900.0141.193
hg18.ensGene.LENGTH0.1980.0130.596
hg18.exoniphy.LENGTH0.3950.0020.727
hg18.geneSymbol.LENGTH0.1080.0040.221
hg18.geneid.LENGTH0.0750.0110.284
hg18.genscan.LENGTH0.0630.0030.247
hg18.knownGene.LENGTH0.1530.0040.570
hg18.knownGeneOld3.LENGTH0.0660.0140.187
hg18.refGene.LENGTH0.0940.0040.200
hg18.sgpGene.LENGTH0.0800.0070.109
hg18.sibGene.LENGTH0.4160.0011.255
hg18.xenoRefGene.LENGTH0.3770.0040.949
hg19.ccdsGene.LENGTH0.0340.0210.067
hg19.ensGene.LENGTH0.4010.0080.993
hg19.exoniphy.LENGTH0.7680.0061.791
hg19.geneSymbol.LENGTH0.0920.0100.207
hg19.knownGene.LENGTH0.1740.0080.247
hg19.nscanGene.LENGTH0.1430.0000.380
hg19.refGene.LENGTH0.0920.0090.222
hg19.xenoRefGene.LENGTH0.3940.0000.828
loxAfr3.xenoRefGene.LENGTH0.8680.0001.641
mm7.ensGene.LENGTH0.1410.0000.525
mm7.geneSymbol.LENGTH0.0960.0000.298
mm7.geneid.LENGTH0.0860.0080.286
mm7.genscan.LENGTH0.0700.0000.239
mm7.knownGene.LENGTH0.1050.0000.377
mm7.refGene.LENGTH0.0830.0000.215
mm7.sgpGene.LENGTH0.0710.0220.180
mm7.xenoRefGene.LENGTH0.4260.0021.273
mm8.ccdsGene.LENGTH0.0300.0000.104
mm8.ensGene.LENGTH0.0850.0080.263
mm8.geneSymbol.LENGTH0.0830.0000.193
mm8.geneid.LENGTH0.0820.0110.114
mm8.genscan.LENGTH0.1960.0030.386
mm8.knownGene.LENGTH0.0920.0000.112
mm8.nscanGene.LENGTH0.0650.0010.113
mm8.refGene.LENGTH0.0840.0000.173
mm8.sgpGene.LENGTH0.0770.0140.213
mm8.sibGene.LENGTH0.2700.0020.803
mm8.xenoRefGene.LENGTH0.4610.0071.099
mm9.acembly.LENGTH0.4780.0001.478
mm9.ccdsGene.LENGTH0.0280.0170.171
mm9.ensGene.LENGTH0.1460.0210.288
mm9.exoniphy.LENGTH0.7860.0102.033
mm9.geneSymbol.LENGTH0.0920.0000.235
mm9.geneid.LENGTH0.0800.0220.312
mm9.genscan.LENGTH0.0670.0000.192
mm9.knownGene.LENGTH0.1120.0210.410
mm9.nscanGene.LENGTH0.0620.0000.181
mm9.refGene.LENGTH0.0850.0040.229
mm9.sgpGene.LENGTH0.0870.0070.278
mm9.xenoRefGene.LENGTH0.3780.0160.790
monDom1.genscan.LENGTH0.1550.0030.445
monDom4.ensGene.LENGTH0.0670.0080.083
monDom4.geneSymbol.LENGTH0.0050.0000.005
monDom4.genscan.LENGTH0.0680.0110.204
monDom4.nscanGene.LENGTH0.0570.0290.090
monDom4.refGene.LENGTH0.0050.0000.005
monDom4.xenoRefGene.LENGTH0.4090.0041.156
monDom5.ensGene.LENGTH0.1770.0000.448
monDom5.geneSymbol.LENGTH0.0050.0000.018
monDom5.genscan.LENGTH0.0490.0040.056
monDom5.nscanGene.LENGTH0.1090.0040.203
monDom5.refGene.LENGTH0.0050.0000.006
monDom5.xenoRefGene.LENGTH0.7360.0041.419
ornAna1.ensGene.LENGTH0.0980.0110.119
ornAna1.geneSymbol.LENGTH0.0030.0000.003
ornAna1.refGene.LENGTH0.0030.0000.004
ornAna1.xenoRefGene.LENGTH0.6510.0121.327
oryLat2.ensGene.LENGTH0.1640.0110.374
oryLat2.geneSymbol.LENGTH0.0020.0040.007
oryLat2.refGene.LENGTH0.0020.0030.006
oryLat2.xenoRefGene.LENGTH0.5100.0061.073
panTro1.ensGene.LENGTH0.1000.0070.324
panTro1.geneid.LENGTH0.0460.0250.189
panTro1.genscan.LENGTH0.1160.0040.221
panTro1.xenoRefGene.LENGTH0.1190.0030.264
panTro2.ensGene.LENGTH0.1130.0040.220
panTro2.geneSymbol.LENGTH0.1040.0010.211
panTro2.genscan.LENGTH0.4160.0010.993
panTro2.nscanGene.LENGTH0.0590.0000.174
panTro2.refGene.LENGTH0.0990.0060.223
panTro2.xenoRefGene.LENGTH0.4590.0010.732
petMar1.xenoRefGene.LENGTH0.2460.0110.375
ponAbe2.ensGene.LENGTH0.0880.0040.093
ponAbe2.geneSymbol.LENGTH0.0130.0040.018
ponAbe2.genscan.LENGTH0.0600.0000.061
ponAbe2.nscanGene.LENGTH0.0600.0000.095
ponAbe2.refGene.LENGTH0.0130.0040.021
ponAbe2.xenoRefGene.LENGTH0.5850.0030.908
priPac1.xenoRefGene.LENGTH0.4460.0000.904
rheMac2.ensGene.LENGTH0.1430.0070.294
rheMac2.geneSymbol.LENGTH0.0070.0000.008
rheMac2.geneid.LENGTH0.0670.0100.130
rheMac2.nscanGene.LENGTH0.0580.0000.065
rheMac2.refGene.LENGTH0.0070.0000.006
rheMac2.sgpGene.LENGTH0.0720.0040.110
rheMac2.xenoRefGene.LENGTH0.4850.0010.835
rn3.ensGene.LENGTH0.1730.0110.509
rn3.geneSymbol.LENGTH0.0700.0030.133
rn3.geneid.LENGTH0.0470.0040.064
rn3.genscan.LENGTH0.0630.0040.104
rn3.knownGene.LENGTH0.0220.0100.061
rn3.nscanGene.LENGTH0.0610.0000.162
rn3.refGene.LENGTH0.0520.0180.163
rn3.sgpGene.LENGTH0.0570.0040.107
rn3.xenoRefGene.LENGTH0.5450.0000.738
rn4.ensGene.LENGTH0.1350.0000.242
rn4.geneSymbol.LENGTH0.0660.0070.129
rn4.geneid.LENGTH0.2380.0110.524
rn4.genscan.LENGTH0.0620.0030.083
rn4.knownGene.LENGTH0.0240.0110.044
rn4.nscanGene.LENGTH0.0670.0140.112
rn4.refGene.LENGTH0.0470.0250.152
rn4.sgpGene.LENGTH0.0900.0080.201
rn4.xenoRefGene.LENGTH0.3340.0080.668
sacCer1.ensGene.LENGTH0.0190.0110.066
sacCer2.ensGene.LENGTH0.0210.0070.064
strPur1.geneSymbol.LENGTH0.0070.0000.007
strPur1.genscan.LENGTH0.0680.0010.175
strPur1.refGene.LENGTH0.0060.0000.019
strPur1.xenoRefGene.LENGTH0.5120.0071.154
strPur2.geneSymbol.LENGTH0.0020.0040.011
strPur2.genscan.LENGTH0.0990.0030.166
strPur2.refGene.LENGTH0.0050.0000.008
strPur2.xenoRefGene.LENGTH0.7120.0011.279
supportedGeneIDs0.0110.0000.011
supportedGenomes0.0800.0000.571
taeGut1.ensGene.LENGTH0.0730.0030.267
taeGut1.geneSymbol.LENGTH0.0040.0000.037
taeGut1.genscan.LENGTH0.0390.0110.130
taeGut1.nscanGene.LENGTH0.0220.0200.130
taeGut1.refGene.LENGTH0.0030.0000.004
taeGut1.xenoRefGene.LENGTH0.8690.0042.359
tetNig1.ensGene.LENGTH0.0870.0180.326
tetNig1.geneid.LENGTH0.0600.0150.159
tetNig1.genscan.LENGTH0.0580.0140.190
tetNig1.nscanGene.LENGTH0.0780.0040.214
tetNig2.ensGene.LENGTH0.0760.0070.167
unfactor0.0050.0000.010
xenTro1.genscan.LENGTH0.0850.0040.174
xenTro2.ensGene.LENGTH0.1100.0070.239
xenTro2.geneSymbol.LENGTH0.0340.0150.102
xenTro2.genscan.LENGTH0.0910.0000.180
xenTro2.refGene.LENGTH0.0330.0150.104