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BioC experimental data: CHECK report for FANTOM3and4CAGE on moscato2

This page was generated on 2015-10-07 16:21:20 -0700 (Wed, 07 Oct 2015).

Package 79/241HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FANTOM3and4CAGE 1.4.0
Vanja Haberle
Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/FANTOM3and4CAGE
Last Changed Rev: 3279 / Revision: 3442
Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: FANTOM3and4CAGE
Version: 1.4.0
Command: rm -rf FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE.Rcheck && mkdir FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE_1.4.0.tar.gz >FANTOM3and4CAGE.Rcheck\00install.out 2>&1 && cp FANTOM3and4CAGE.Rcheck\00install.out FANTOM3and4CAGE-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=FANTOM3and4CAGE.buildbin-libdir --install="check:FANTOM3and4CAGE-install.out" --force-multiarch --no-vignettes --timings FANTOM3and4CAGE_1.4.0.tar.gz
StartedAt: 2015-10-07 10:31:01 -0700 (Wed, 07 Oct 2015)
EndedAt: 2015-10-07 10:32:53 -0700 (Wed, 07 Oct 2015)
EllapsedTime: 111.9 seconds
RetCode: 0
Status:  OK  
CheckDir: FANTOM3and4CAGE.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE.Rcheck && mkdir FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE_1.4.0.tar.gz >FANTOM3and4CAGE.Rcheck\00install.out 2>&1 && cp FANTOM3and4CAGE.Rcheck\00install.out FANTOM3and4CAGE-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=FANTOM3and4CAGE.buildbin-libdir --install="check:FANTOM3and4CAGE-install.out" --force-multiarch --no-vignettes --timings FANTOM3and4CAGE_1.4.0.tar.gz
###
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* using log directory 'E:/biocbld/bbs-3.1-data-experiment/meat/FANTOM3and4CAGE.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'FANTOM3and4CAGE/DESCRIPTION' ... OK
* this is package 'FANTOM3and4CAGE' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'FANTOM3and4CAGE' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 34.6Mb
  sub-directories of 1Mb or more:
    data  34.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [23s] OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
FANTOMtissueCAGEhuman     11.59   0.28   11.87
FANTOMtimecourseCAGEhuman  5.31   0.12    5.43
FANTOMtissueCAGEmouse      5.21   0.13    5.34
** running examples for arch 'x64' ... [20s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
FANTOMtissueCAGEhuman  9.9    0.2   10.11
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'E:/biocbld/bbs-3.1-data-experiment/meat/FANTOM3and4CAGE.Rcheck/00check.log'
for details.


FANTOM3and4CAGE.Rcheck/00install.out:


install for i386

* installing *source* package 'FANTOM3and4CAGE' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'FANTOM3and4CAGE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FANTOM3and4CAGE' as FANTOM3and4CAGE_1.4.0.zip
* DONE (FANTOM3and4CAGE)

FANTOM3and4CAGE.Rcheck/examples_i386/FANTOM3and4CAGE-Ex.timings:

nameusersystemelapsed
FANTOMhumanSamples0.030.000.03
FANTOMmouseSamples000
FANTOMtimecourseCAGEhuman5.310.125.43
FANTOMtimecourseCAGEmouse0.420.000.42
FANTOMtissueCAGEhuman11.59 0.2811.87
FANTOMtissueCAGEmouse5.210.135.34

FANTOM3and4CAGE.Rcheck/examples_x64/FANTOM3and4CAGE-Ex.timings:

nameusersystemelapsed
FANTOMhumanSamples0.030.000.03
FANTOMmouseSamples000
FANTOMtimecourseCAGEhuman4.740.094.84
FANTOMtimecourseCAGEmouse0.330.020.34
FANTOMtissueCAGEhuman 9.90 0.2010.11
FANTOMtissueCAGEmouse4.000.224.21