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BioC 3.1: CHECK report for Clomial on moscato2

This page was generated on 2015-10-09 09:31:00 -0700 (Fri, 09 Oct 2015).

Package 174/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Clomial 1.4.0
Habil Zare
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/Clomial
Last Changed Rev: 102591 / Revision: 109384
Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Clomial
Version: 1.4.0
Command: rm -rf Clomial.buildbin-libdir Clomial.Rcheck && mkdir Clomial.buildbin-libdir Clomial.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Clomial.buildbin-libdir Clomial_1.4.0.tar.gz >Clomial.Rcheck\00install.out 2>&1 && cp Clomial.Rcheck\00install.out Clomial-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=Clomial.buildbin-libdir --install="check:Clomial-install.out" --force-multiarch --no-vignettes --timings Clomial_1.4.0.tar.gz
StartedAt: 2015-10-09 00:24:36 -0700 (Fri, 09 Oct 2015)
EndedAt: 2015-10-09 00:27:54 -0700 (Fri, 09 Oct 2015)
EllapsedTime: 197.9 seconds
RetCode: 0
Status:  OK  
CheckDir: Clomial.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf Clomial.buildbin-libdir Clomial.Rcheck && mkdir Clomial.buildbin-libdir Clomial.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Clomial.buildbin-libdir Clomial_1.4.0.tar.gz >Clomial.Rcheck\00install.out 2>&1 && cp Clomial.Rcheck\00install.out Clomial-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=Clomial.buildbin-libdir --install="check:Clomial-install.out" --force-multiarch --no-vignettes --timings Clomial_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/Clomial.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Clomial/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Clomial' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Clomial' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [73s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
choose.best        31.36   0.00   31.36
Clomial-package    10.59   0.01   10.61
Clomial             8.69   0.00    8.69
compute.bic         6.15   0.00    6.14
Clomial.iterate     6.01   0.00    6.01
Clomial.likelihood  5.66   0.00    5.66
** running examples for arch 'x64' ... [91s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
choose.best        38.77      0   38.76
Clomial            12.41      0   12.41
Clomial-package    10.97      0   10.99
compute.bic         8.99      0    8.99
Clomial.iterate     7.22      0    7.22
Clomial.likelihood  5.37      0    5.37
compute.errors      5.14      0    5.15
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Clomial.Rcheck/00install.out:


install for i386

* installing *source* package 'Clomial' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'Clomial' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Clomial' as Clomial_1.4.0.zip
* DONE (Clomial)

Clomial.Rcheck/examples_i386/Clomial-Ex.timings:

nameusersystemelapsed
Clomial-package10.59 0.0110.61
Clomial8.690.008.69
Clomial.generate.data0.710.000.71
Clomial.iterate6.010.006.01
Clomial.likelihood5.660.005.66
Clomial10000.280.020.30
breastCancer000
choose.best31.36 0.0031.36
compute.bic6.150.006.14
compute.errors2.960.002.97

Clomial.Rcheck/examples_x64/Clomial-Ex.timings:

nameusersystemelapsed
Clomial-package10.97 0.0010.99
Clomial12.41 0.0012.41
Clomial.generate.data1.020.001.02
Clomial.iterate7.220.007.22
Clomial.likelihood5.370.005.37
Clomial10000.330.000.33
breastCancer0.010.000.02
choose.best38.77 0.0038.76
compute.bic8.990.008.99
compute.errors5.140.005.15