BioC 3.1: CHECK report for ChemmineR on zin2
This page was generated on 2015-10-09 09:23:41 -0700 (Fri, 09 Oct 2015).
ChemmineR 2.20.4
Thomas Girke
| Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/ChemmineR | | Last Changed Rev: 108424 / Revision: 109384 | | Last Changed Date: 2015-09-10 12:42:08 -0700 (Thu, 10 Sep 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | [ WARNINGS ] | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | WARNINGS | OK | |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | WARNINGS | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | WARNINGS | OK | |
Summary
| Package: ChemmineR |
| Version: 2.20.4 |
| Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings ChemmineR_2.20.4.tar.gz |
| StartedAt: 2015-10-08 23:14:56 -0700 (Thu, 08 Oct 2015) |
| EndedAt: 2015-10-08 23:17:16 -0700 (Thu, 08 Oct 2015) |
| EllapsedTime: 139.9 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: ChemmineR.Rcheck |
| Warnings: 1 |
Command output
##############################################################################
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###
### Running command:
###
### /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings ChemmineR_2.20.4.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.1-bioc/meat/ChemmineR.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChemmineR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChemmineR’ version ‘2.20.4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChemmineR’ can be installed ... [16s/22s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
‘ChemmineOB’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
‘ChemmineDrugs’ ‘ChemmineOB’ ‘RPostgreSQL’ ‘RSQLite’ ‘fmcsR’ ‘grid’
‘png’ ‘snow’
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Namespace in Imports field not imported from: ‘BiocGenerics’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Found the following possibly unsafe calls:
File ‘ChemmineR/R/sim.R’:
unlockBinding(".progress_bar_int_cnt", environment(.progress_bar))
.data.frame.to.str: no visible binding for global variable ‘string’
.parseV3000: no visible binding for global variable ‘AW’
applyOptions: no visible global function definition for ‘convertFormat’
canonicalNumbering: no visible global function definition for
‘canonicalNumbering_OB’
canonicalNumberingOB: no visible global function definition for
‘canonicalNumbering_OB’
concatenate_plots: no visible binding for global variable ‘arrangeGrob’
draw_sdf: no visible global function definition for ‘fmcs’
exactMassOB: no visible global function definition for ‘exactMass_OB’
fingerprintOB: no visible global function definition for
‘fingerprint_OB’
getDbConn: no visible global function definition for ‘error’
handle_raster: no visible global function definition for ‘readPNG’
handle_raster: no visible global function definition for ‘rasterGrob’
handle_segs: no visible binding for global variable ‘C1’
handle_segs: no visible binding for global variable ‘C2’
handle_segs: no visible binding for global variable ‘C1.1’
handle_segs: no visible binding for global variable ‘C2.1’
handle_text: no visible binding for global variable ‘C1’
handle_text: no visible binding for global variable ‘C2’
insertDef: no visible global function definition for
‘dbGetPreparedQuery’
insertDescriptor: no visible global function definition for
‘dbGetPreparedQuery’
insertDescriptorType: no visible global function definition for
‘dbGetPreparedQuery’
insertFeature: no visible global function definition for
‘dbGetPreparedQuery’
insertNamedDef: no visible global function definition for
‘dbGetPreparedQuery’
parBatchByIndex: no visible global function definition for
‘clusterExport’
parBatchByIndex: no visible global function definition for
‘clusterApplyLB’
postgresqlWriteTable: no visible global function definition for
‘postgresqlTableRef’
postgresqlWriteTable: no visible global function definition for
‘postgresqlQuoteId’
postgresqlWriteTable: no visible global function definition for
‘postgresqlpqExec’
postgresqlWriteTable: no visible global function definition for
‘postgresqlCopyInDataframe’
postgresqlWriteTable: no visible global function definition for
‘postgresqlgetResult’
propOB: no visible global function definition for ‘prop_OB’
sdf2OBMol: no visible global function definition for ‘forEachMol’
sdf2smiles: no visible global function definition for ‘convertFormat’
sdf2smilesOB: no visible global function definition for ‘convertFormat’
setPriorities: no visible global function definition for
‘clusterExport’
smartsSearchOB: no visible global function definition for
‘smartsSearch_OB’
smile2sdfFile: no visible global function definition for
‘convertFormatFile’
smiles2sdf: no visible global function definition for ‘convertFormat’
smiles2sdfOB: no visible global function definition for ‘convertFormat’
updatePriorities: no visible global function definition for
‘dbGetPreparedQuery’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... WARNING
Found the following file(s) containing GNU extensions:
src/Makevars
Portable Makefiles do not use GNU extensions such as +=, :=, $(shell),
$(wildcard), ifeq ... endif. See section ‘Writing portable packages’ in
the ‘Writing R Extensions’ manual.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
File ‘ChemmineR/libs/ChemmineR.so’:
Found ‘_ZSt4cerr’, possibly from ‘std::cerr’ (C++)
Objects: ‘desc.o’, ‘formats.o’, ‘script.o’
Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
Object: ‘cluster.o’
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... NOTE
The following directory looks like a leftover from 'knitr':
‘figure’
Please remove from your package.
* checking examples ... [33s/42s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’ [15s/19s]
[15s/19s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 5 NOTEs
See
‘/home/biocbuild/bbs-3.1-bioc/meat/ChemmineR.Rcheck/00check.log’
for details.
ChemmineR.Rcheck/00install.out:
* installing *source* package ‘ChemmineR’ ...
** libs
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-3.1-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.1-bioc/R/library/BH/include" -DNO_MAIN -DNO_DEBUG -fpic -g -O2 -Wall -c DisjointSets.cpp -o DisjointSets.o
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-3.1-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.1-bioc/R/library/BH/include" -DNO_MAIN -DNO_DEBUG -fpic -g -O2 -Wall -c cluster.cc -o cluster.o
cluster.cc: In function ‘int nbr_intersect(std::vector<int>&, std::vector<int>&)’:
cluster.cc:118:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
while (i < nbrs1.size() and j < nbrs2.size()) {
^
cluster.cc:118:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
while (i < nbrs1.size() and j < nbrs2.size()) {
^
cluster.cc: In function ‘int contains(int, std::vector<int>&)’:
cluster.cc:131:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i=0; i < list.size(); i++)
^
cluster.cc: In function ‘DisjointSets cluster(int, int, int, int)’:
cluster.cc:267:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int j = 0; j < nbr_list[i].size(); j ++) {
^
cluster.cc: In function ‘void loadNNMatrix(int, int, int, SEXP)’:
cluster.cc:284:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned i=0; i<N; i++) //rows
^
cluster.cc:298:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if(nbrs.size() < minNbrs) // will end up a singleton
^
cluster.cc: In function ‘void loadNNList(int, int, SEXP)’:
cluster.cc:314:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned i=0; i<N; i++) //rows
^
cluster.cc:332:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if(nbrs.size() < minNbrs) // will end up a singleton
^
cluster.cc: In function ‘SEXPREC* jarvis_patrick(SEXP, SEXP, SEXP, SEXP, SEXP)’:
cluster.cc:390:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned i=0; i<N; i++){
^
cluster.cc: At global scope:
cluster.cc:49:13: warning: ‘void prepare_neighbors(const char*, int, int)’ defined but not used [-Wunused-function]
void static prepare_neighbors(const char* nbr_file, int skip, int p)
^
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-3.1-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.1-bioc/R/library/BH/include" -DNO_MAIN -DNO_DEBUG -fpic -g -O2 -Wall -c cstrsplit.cc -o cstrsplit.o
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-3.1-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.1-bioc/R/library/BH/include" -DNO_MAIN -DNO_DEBUG -fpic -g -O2 -Wall -c desc.cc -o desc.o
desc.cc: In function ‘SEXPREC* genAPDescriptor(SEXP)’:
desc.cc:249:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i=0; i < descs.size(); i++)
^
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-3.1-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.1-bioc/R/library/BH/include" -DNO_MAIN -DNO_DEBUG -fpic -g -O2 -Wall -c fingerprints.cc -o fingerprints.o
fingerprints.cc: In function ‘SEXPREC* uniquifyAtomPairs(SEXP)’:
fingerprints.cc:138:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i=0; i < aps.size(); i++)
^
fingerprints.cc:145:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i=0; i < aps.size(); i++){
^
fingerprints.cc:158:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i=0; i < aps.size(); i++){
^
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-3.1-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.1-bioc/R/library/BH/include" -DNO_MAIN -DNO_DEBUG -fpic -g -O2 -Wall -c formats.cc -o formats.o
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-3.1-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.1-bioc/R/library/BH/include" -DNO_MAIN -DNO_DEBUG -fpic -g -O2 -Wall -c molecule.cc -o molecule.o
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-3.1-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.1-bioc/R/library/BH/include" -DNO_MAIN -DNO_DEBUG -fpic -g -O2 -Wall -c r_wrap.cc -o r_wrap.o
r_wrap.cc: In function ‘SEXPREC* SWIG_MakePtr(void*, const char*, R_SWIG_Owner)’:
r_wrap.cc:949:15: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
const char *p = typeName;
^
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-3.1-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.1-bioc/R/library/BH/include" -DNO_MAIN -DNO_DEBUG -fpic -g -O2 -Wall -c script.cc -o script.o
In file included from script.cc:2:0:
desc.h:39:13: warning: ‘elements’ defined but not used [-Wunused-variable]
static char elements[112][3] = {
^
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-3.1-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.1-bioc/R/library/BH/include" -DNO_MAIN -DNO_DEBUG -fpic -g -O2 -Wall -c similarity.cc -o similarity.o
In file included from similarity.cc:1:0:
desc.h:39:13: warning: ‘elements’ defined but not used [-Wunused-variable]
static char elements[112][3] = {
^
g++ -shared -L/home/biocbuild/bbs-3.1-bioc/R/lib -L/usr/local/lib -o ChemmineR.so DisjointSets.o cluster.o cstrsplit.o desc.o fingerprints.o formats.o molecule.o r_wrap.o script.o similarity.o -L/home/biocbuild/bbs-3.1-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.1-bioc/meat/ChemmineR.Rcheck/ChemmineR/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘as.vector’ from package ‘base’ in package ‘ChemmineR’
Creating a generic function for ‘as.matrix’ from package ‘base’ in package ‘ChemmineR’
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘ChemmineR’
Creating a generic function for ‘print’ from package ‘base’ in package ‘ChemmineR’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ChemmineR)
ChemmineR.Rcheck/ChemmineR-Ex.timings:
| name | user | system | elapsed
|
| AP-class | 0.342 | 0.040 | 0.444 |
|
| APset-class | 0.345 | 0.024 | 0.462 |
|
| ExtSDF-class | 0.002 | 0.000 | 0.001 |
|
| FP-class | 0.141 | 0.000 | 0.184 |
|
| FPset-class | 0.311 | 0.019 | 0.505 |
|
| SDF-class | 0.057 | 0.008 | 0.064 |
|
| SDF2apcmp | 0.021 | 0.000 | 0.021 |
|
| SDFset-class | 0.364 | 0.008 | 0.450 |
|
| SDFset2SDF | 0.101 | 0.016 | 0.116 |
|
| SDFset2list | 0.055 | 0.008 | 0.066 |
|
| SDFstr-class | 0.263 | 0.000 | 0.312 |
|
| SMI-class | 0.003 | 0.000 | 0.002 |
|
| SMIset-class | 0.006 | 0.000 | 0.018 |
|
| addDescriptorType | 0 | 0 | 0 |
|
| addNewFeatures | 2.525 | 0.019 | 3.349 |
|
| ap | 0.084 | 0.008 | 0.092 |
|
| apfp | 0.002 | 0.000 | 0.002 |
|
| apset | 0.005 | 0.000 | 0.005 |
|
| apset2descdb | 0.317 | 0.047 | 0.375 |
|
| atomblock | 0.092 | 0.008 | 0.124 |
|
| atomcount | 0.185 | 0.004 | 0.205 |
|
| atomprop | 0.003 | 0.000 | 0.003 |
|
| atomsubset | 0.027 | 0.000 | 0.051 |
|
| batchByIndex | 0.001 | 0.000 | 0.012 |
|
| bondblock | 0.096 | 0.003 | 0.186 |
|
| bonds | 0.030 | 0.000 | 0.031 |
|
| browseJob | 0.001 | 0.000 | 0.001 |
|
| bufferLines | 0.001 | 0.000 | 0.000 |
|
| bufferResultSet | 0.001 | 0.000 | 0.001 |
|
| byCluster | 0.843 | 0.001 | 1.180 |
|
| canonicalNumbering | 0.218 | 0.019 | 0.740 |
|
| canonicalize | 0.036 | 0.004 | 0.073 |
|
| cid | 0.021 | 0.000 | 0.042 |
|
| cluster.sizestat | 0.589 | 0.008 | 0.808 |
|
| cluster.visualize | 0.720 | 0.003 | 0.929 |
|
| cmp.cluster | 2.241 | 0.008 | 2.665 |
|
| cmp.duplicated | 0.066 | 0.000 | 0.090 |
|
| cmp.parse | 0.023 | 0.000 | 0.051 |
|
| cmp.parse1 | 0.001 | 0.000 | 0.001 |
|
| cmp.search | 0.695 | 0.008 | 0.994 |
|
| cmp.similarity | 0.019 | 0.000 | 0.019 |
|
| conMA | 0.053 | 0.008 | 0.074 |
|
| connections | 0.184 | 0.000 | 0.258 |
|
| datablock | 0.261 | 0.004 | 0.427 |
|
| datablock2ma | 0.034 | 0.000 | 0.056 |
|
| db.explain | 0.034 | 0.015 | 0.074 |
|
| db.subset | 0.004 | 0.000 | 0.003 |
|
| dbTransaction | 0.029 | 0.004 | 0.034 |
|
| desc2fp | 0.111 | 0.000 | 0.123 |
|
| draw_sdf | 0.355 | 0.001 | 0.461 |
|
| exactMassOB | 0.566 | 0.001 | 0.719 |
|
| findCompounds | 2.117 | 0.009 | 2.595 |
|
| findCompoundsByName | 0.319 | 0.000 | 0.415 |
|
| fingerprintOB | 0.001 | 0.000 | 0.001 |
|
| fold | 0.002 | 0.000 | 0.001 |
|
| foldCount | 0.002 | 0.000 | 0.005 |
|
| fp2bit | 0.366 | 0.000 | 0.510 |
|
| fpSim | 0.369 | 0.000 | 0.440 |
|
| fptype | 0.001 | 0.000 | 0.001 |
|
| fromNNMatrix | 0.833 | 0.004 | 1.002 |
|
| genAPDescriptors | 0.017 | 0.000 | 0.033 |
|
| genParameters | 0.509 | 0.000 | 0.599 |
|
| generate3DCoords | 0.001 | 0.000 | 0.001 |
|
| getAllCompoundIds | 0.334 | 0.000 | 0.520 |
|
| getCompoundFeatures | 2.097 | 0.000 | 2.450 |
|
| getCompoundNames | 0.319 | 0.002 | 0.375 |
|
| getCompounds | 0.328 | 0.004 | 0.416 |
|
| getIds | 0.000 | 0.000 | 0.001 |
|
| grepSDFset | 0.048 | 0.000 | 0.068 |
|
| groups | 0.118 | 0.000 | 0.119 |
|
| header | 0.095 | 0.000 | 0.146 |
|
| initDb | 0.034 | 0.000 | 0.035 |
|
| jarvisPatrick | 1.985 | 0.001 | 2.524 |
|
| jobToken-class | 0.001 | 0.000 | 0.001 |
|
| launchCMTool | 0.000 | 0.000 | 0.001 |
|
| listCMTools | 0.001 | 0.000 | 0.001 |
|
| listFeatures | 0.341 | 0.004 | 0.353 |
|
| loadSdf | 2.306 | 0.007 | 2.875 |
|
| makeUnique | 0.017 | 0.000 | 0.036 |
|
| maximallyDissimilar | 0.254 | 0.000 | 0.354 |
|
| nearestNeighbors | 1.165 | 0.001 | 1.300 |
|
| numBits | 0.001 | 0.000 | 0.001 |
|
| obmol | 0.035 | 0.000 | 0.034 |
|
| parBatchByIndex | 0.001 | 0.000 | 0.000 |
|
| plotStruc | 0.237 | 0.008 | 0.429 |
|
| propOB | 0.000 | 0.000 | 0.001 |
|
| pubchemFPencoding | 0.003 | 0.000 | 0.023 |
|
| read.AP | 0.016 | 0.000 | 0.029 |
|
| read.SDFindex | 0.017 | 0.000 | 0.028 |
|
| read.SDFset | 0.627 | 0.000 | 0.730 |
|
| read.SDFstr | 0.855 | 0.004 | 1.014 |
|
| read.SMIset | 0.002 | 0.000 | 0.002 |
|
| regenerateCoords | 0.001 | 0.000 | 0.000 |
|
| result | 0.000 | 0.000 | 0.001 |
|
| rings | 0.530 | 0.000 | 0.584 |
|
| sdf.subset | 0.001 | 0.000 | 0.001 |
|
| sdf.visualize | 0.015 | 0.000 | 0.015 |
|
| sdf2ap | 0.332 | 0.031 | 0.505 |
|
| sdf2list | 0.019 | 0.008 | 0.027 |
|
| sdf2smiles | 0.000 | 0.000 | 0.001 |
|
| sdf2str | 0.027 | 0.000 | 0.027 |
|
| sdfStream | 0.016 | 0.000 | 0.017 |
|
| sdfid | 0.015 | 0.004 | 0.025 |
|
| sdfsample | 0.049 | 0.000 | 0.107 |
|
| sdfstr2list | 0.679 | 0.140 | 0.856 |
|
| searchSim | 0 | 0 | 0 |
|
| searchString | 0.000 | 0.000 | 0.001 |
|
| selectInBatches | 0.001 | 0.000 | 0.001 |
|
| setPriorities | 0.001 | 0.000 | 0.001 |
|
| smartsSearchOB | 0.001 | 0.000 | 0.001 |
|
| smiles2sdf | 0 | 0 | 0 |
|
| smisample | 0.003 | 0.000 | 0.006 |
|
| status | 0.000 | 0.000 | 0.001 |
|
| toolDetails | 0.001 | 0.000 | 0.000 |
|
| trimNeighbors | 1.596 | 0.001 | 1.993 |
|
| validSDF | 0.021 | 0.000 | 0.021 |
|
| view | 0.056 | 0.000 | 0.057 |
|
| write.SDF | 0.170 | 0.003 | 0.236 |
|
| write.SDFsplit | 0.016 | 0.000 | 0.016 |
|
| write.SMI | 0.001 | 0.000 | 0.002 |
|