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### /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocParallel
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* checking for file ‘BiocParallel/DESCRIPTION’ ... OK
* preparing ‘BiocParallel’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX .
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[]\T1/zi4/m/n/10 logical(1)\T1/ptm/m/n/10 Flag to de-ter-mine in apply-like fun
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-to-ries in the \T1/zi4/m/n/10 work.dir\T1/ptm/m/n/10 . If \T1/zi4/m/n/10 clean
up
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[]\T1/zi4/m/n/10 bpmapply(FUN, ..., MoreArgs=NULL, SIMPLIFY=TRUE, USE.NAMES=TRU
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\T1/ptm/m/n/10 each worker re-turns, the data are com-bined with the \T1/zi4/m/
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[]\T1/ptm/m/n/10 See \T1/zi4/m/n/10 showMethods{bplapply} \T1/ptm/m/n/10 for ad
-di-tional meth-ods, e.g., \T1/zi4/m/n/10 method?bplapply("MulticoreParam")\T1/
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[]\T1/ptm/m/n/10 See \T1/zi4/m/n/10 showMethods{bpmapply} \T1/ptm/m/n/10 for ad
-di-tional meth-ods, e.g., \T1/zi4/m/n/10 method?bpmapply("MulticoreParam")\T1/
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[]\T1/ptm/m/n/10 Identifies un-suc-cess-ful re-sults re-turned from \T1/zi4/m/n
/10 bplapply\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bpmapply\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 bpvec\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bpaggregate \T1/ptm/m/n/10 or \T1/zi4
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[]\T1/zi4/m/n/10 MulticoreParam(workers = multicoreWorkers(), tasks = 0L,
catch.errors = TRUE, stop.on.error = FALSE,
tasks = 0L, progressbar = FALSE, RNGseed = NULL,
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progressbar = FALSE, RNGseed = NULL, timeout = Inf,
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[]\T1/zi4/m/n/10 as(from, "SnowParam")\T1/ptm/m/n/10 : Cre-ates a \T1/zi4/m/n/1
0 SnowParam \T1/ptm/m/n/10 ob-ject from a \T1/zi4/m/n/10 SOCKcluster \T1/ptm/m/
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[]\T1/ptm/m/n/10 See \T1/zi4/m/n/10 showMethods{bplapply} \T1/ptm/m/n/10 for ad
-di-tional meth-ods, e.g., \T1/zi4/m/n/10 method?bplapply("MulticoreParam")\T1/
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[]\T1/ptm/m/n/10 See \T1/zi4/m/n/10 showMethods{bpmapply} \T1/ptm/m/n/10 for ad
-di-tional meth-ods, e.g., \T1/zi4/m/n/10 method?bpmapply("MulticoreParam")\T1/
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[]\T1/ptm/m/n/10 Identifies un-suc-cess-ful re-sults re-turned from \T1/zi4/m/n
/10 bplapply\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bpmapply\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 bpvec\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bpaggregate \T1/ptm/m/n/10 or \T1/zi4
/m/n/10 bpvectorize\T1/ptm/m/n/10 .
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[]\T1/zi4/m/n/10 MulticoreParam(workers = multicoreWorkers(), tasks = 0L,
catch.errors = TRUE, stop.on.error = FALSE,
tasks = 0L, progressbar = FALSE, RNGseed = NULL,
timeout = Inf, log = FALSE, threshold = "INFO",
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jobname = "BPJOB", ...)\T1/ptm/m/n/10 :
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ile \T1/ptm/m/n/10 file) with, for in-stance, \T1/zi4/m/n/10 options(MulticoreP
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[]\T1/ptm/m/n/10 NOTE: The \T1/zi4/m/n/10 PSOCK \T1/ptm/m/n/10 clus-ter from th
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[]\T1/zi4/m/n/10 SnowParam(workers = snowWorkers(), type=c("SOCK", "MPI"),
tasks = 0L, catch.errors = TRUE, stop.on.error = FALSE,
progressbar = FALSE, RNGseed = NULL, timeout = Inf,
log = FALSE, threshold = "INFO", logdir = NA_character_,
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[]\T1/zi4/m/n/10 as(from, "SnowParam")\T1/ptm/m/n/10 : Cre-ates a \T1/zi4/m/n/1
0 SnowParam \T1/ptm/m/n/10 ob-ject from a \T1/zi4/m/n/10 SOCKcluster \T1/ptm/m/
n/10 or \T1/zi4/m/n/10 spawnedMPIcluster
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[]\T1/zi4/m/n/10 MulticoreParam(workers = multicoreWorkers(), tasks = 0L,
catch.errors = TRUE, stop.on.error = FALSE,
tasks = 0L, progressbar = FALSE, RNGseed = NULL,
timeout = Inf, log = FALSE, threshold = "INFO",
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jobname = "BPJOB", ...)\T1/ptm/m/n/10 :
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[]\T1/zi4/m/n/10 bpmapply(FUN, ..., MoreArgs=NULL, SIMPLIFY=TRUE,
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[]\T1/ptm/m/n/10 Make this the de-fault \T1/zi4/m/n/10 BiocParallelParam \T1/pt
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,
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ile \T1/ptm/m/n/10 file) with, for in-stance, \T1/zi4/m/n/10 options(MulticoreP
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tasks = 0L, catch.errors = TRUE, stop.on.error = FALSE,
progressbar = FALSE, RNGseed = NULL, timeout = Inf,
log = FALSE, threshold = "INFO", logdir = NA_character_,
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[]\T1/zi4/m/n/10 as(from, "SnowParam")\T1/ptm/m/n/10 : Cre-ates a \T1/zi4/m/n/1
0 SnowParam \T1/ptm/m/n/10 ob-ject from a \T1/zi4/m/n/10 SOCKcluster \T1/ptm/m/
n/10 or \T1/zi4/m/n/10 spawnedMPIcluster
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ile \T1/ptm/m/n/10 file) with, for in-stance, \T1/zi4/m/n/10 options(MulticoreP
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[]\T1/zi4/m/n/10 SnowParam(workers = snowWorkers(), type=c("SOCK", "MPI"),
tasks = 0L, catch.errors = TRUE, stop.on.error = FALSE,
progressbar = FALSE, RNGseed = NULL, timeout = Inf,
log = FALSE, threshold = "INFO", logdir = NA_character_,
resultdir = NA_character_, jobname = "BPJOB", ...)\T1/ptm/m/n/10 :
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[]\T1/zi4/m/n/10 bpmapply(FUN, ..., MoreArgs=NULL, SIMPLIFY=TRUE,
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[]\T1/zi4/m/n/10 as(from, "SnowParam")\T1/ptm/m/n/10 : Cre-ates a \T1/zi4/m/n/1
0 SnowParam \T1/ptm/m/n/10 ob-ject from a \T1/zi4/m/n/10 SOCKcluster \T1/ptm/m/
n/10 or \T1/zi4/m/n/10 spawnedMPIcluster
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ile \T1/ptm/m/n/10 file) with, for in-stance, \T1/zi4/m/n/10 options(MulticoreP
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progressbar = FALSE, RNGseed = NULL, timeout = Inf,
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[38]
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(see the transcript file for additional information)pdfTeX warning (dest): name
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Output written on Rd2.pdf (44 pages, 310922 bytes).
Transcript written on Rd2.log.
Saving output to ‘/tmp/RtmpysumS0/Rbuild1ad11d6a3370/BiocParallel/build/BiocParallel.pdf’ ...
Done
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building ‘BiocParallel_1.2.22.tar.gz’
