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BioC experimental data: CHECK report for yeastGSData on moscato1

This page was generated on 2015-04-08 17:40:59 -0700 (Wed, 08 Apr 2015).

Package 215/219HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
yeastGSData 0.3.1
R. Gentleman
Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/yeastGSData
Last Changed Rev: 3075 / Revision: 3266
Last Changed Date: 2014-10-13 14:52:40 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ WARNINGS ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: yeastGSData
Version: 0.3.1
Command: rm -rf yeastGSData.buildbin-libdir yeastGSData.Rcheck && mkdir yeastGSData.buildbin-libdir yeastGSData.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=yeastGSData.buildbin-libdir yeastGSData_0.3.1.tar.gz >yeastGSData.Rcheck\00install.out 2>&1 && cp yeastGSData.Rcheck\00install.out yeastGSData-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=yeastGSData.buildbin-libdir --install="check:yeastGSData-install.out" --force-multiarch --no-vignettes --timings yeastGSData_0.3.1.tar.gz
StartedAt: 2015-04-08 12:01:46 -0700 (Wed, 08 Apr 2015)
EndedAt: 2015-04-08 12:07:23 -0700 (Wed, 08 Apr 2015)
EllapsedTime: 336.3 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: yeastGSData.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf yeastGSData.buildbin-libdir yeastGSData.Rcheck && mkdir yeastGSData.buildbin-libdir yeastGSData.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=yeastGSData.buildbin-libdir yeastGSData_0.3.1.tar.gz >yeastGSData.Rcheck\00install.out 2>&1 && cp yeastGSData.Rcheck\00install.out yeastGSData-install.out  && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=yeastGSData.buildbin-libdir --install="check:yeastGSData-install.out" --force-multiarch --no-vignettes --timings yeastGSData_0.3.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.0-data-experiment/meat/yeastGSData.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'yeastGSData/DESCRIPTION' ... OK
* this is package 'yeastGSData' version '0.3.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'yeastGSData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 65.2Mb
  sub-directories of 1Mb or more:
    extdata  64.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking Rd files ... NOTE
prepare_Rd: BayesFactorNGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorNGS.Rd:26-27: Dropping empty section \references
prepare_Rd: BayesFactorPGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorPGS.Rd:26-27: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                     old_size new_size compress
  BayesFactorNGS.rda     46Kb     18Kb       xz
  BayesFactorPGS.rda     70Kb     32Kb       xz
  MIPSGS.rda             15Kb      9Kb       xz
  Mpact.rda             199Kb    136Kb    bzip2
  NEGGS.rda             600Kb     40Kb       xz
* checking examples ...
** running examples for arch 'i386' ... [6s] OK
Examples with CPU or elapsed time > 5s
      user system elapsed
NEGGS 5.57   0.06    5.63
** running examples for arch 'x64' ... [5s] OK
* checking PDF version of manual ... OK
* DONE

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-3.0-data-experiment/meat/yeastGSData.Rcheck/00check.log'
for details.

yeastGSData.Rcheck/00install.out:


install for i386

* installing *source* package 'yeastGSData' ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'yeastGSData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'yeastGSData' as yeastGSData_0.3.1.zip
* DONE (yeastGSData)

yeastGSData.Rcheck/examples_i386/yeastGSData-Ex.timings:

nameusersystemelapsed
BayesFactorNGS0.020.000.01
BayesFactorPGS0.010.000.02
BinaryGS000
MIPSGS0.030.000.03
Mpact0.070.000.06
MpactEvidenceCodes000
NEGGS5.570.065.63
POSPS000
PRS000

yeastGSData.Rcheck/examples_x64/yeastGSData-Ex.timings:

nameusersystemelapsed
BayesFactorNGS0.030.000.03
BayesFactorPGS0.020.000.02
BinaryGS000
MIPSGS0.020.000.02
Mpact0.060.000.06
MpactEvidenceCodes000
NEGGS4.860.064.93
POSPS000
PRS0.020.000.01