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BioC experimental data: CHECK report for hgu2beta7 on perceval

This page was generated on 2015-04-08 17:41:21 -0700 (Wed, 08 Apr 2015).

Package 110/219HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
hgu2beta7 1.5.1
Bioconductor Package Maintainer
Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/hgu2beta7
Last Changed Rev: 3075 / Revision: 3266
Last Changed Date: 2014-10-13 14:52:40 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  WARNINGS  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ WARNINGS ] OK 

Summary

Package: hgu2beta7
Version: 1.5.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch hgu2beta7_1.5.1.tar.gz
StartedAt: 2015-04-08 10:05:56 -0700 (Wed, 08 Apr 2015)
EndedAt: 2015-04-08 10:07:12 -0700 (Wed, 08 Apr 2015)
EllapsedTime: 76.3 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: hgu2beta7.Rcheck
Warnings: 3

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch hgu2beta7_1.5.1.tar.gz
###
##############################################################################
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* using log directory ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/hgu2beta7.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hgu2beta7/DESCRIPTION’ ... OK
* this is package ‘hgu2beta7’ version ‘1.5.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘hgu2beta7’ can be installed ... [1s/5s] OK
* checking installed package size ... NOTE
  installed size is  7.0Mb
  sub-directories of 1Mb or more:
    data   6.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory ‘data’ contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
hgu2beta7: no visible binding for global variable ‘hgu2beta7QC’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
'library' or 'require' call not declared from: ‘annotate’
* checking contents of ‘data’ directory ... WARNING
Files not of a type allowed in a ‘data’ directory:
  ‘Rdata.rdb’ ‘Rdata.rds’ ‘Rdata.rdx’
Please use e.g. ‘inst/extdata’ for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [13s/13s] OK
* checking PDF version of manual ... OK
* DONE

WARNING: There were 3 warnings.
NOTE: There were 2 notes.
See
  ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/hgu2beta7.Rcheck/00check.log’
for details.

hgu2beta7.Rcheck/00install.out:

* installing *source* package ‘hgu2beta7’ ...
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (hgu2beta7)

hgu2beta7.Rcheck/hgu2beta7-Ex.timings:

nameusersystemelapsed
hgu2beta7ACCNUM0.6000.0310.632
hgu2beta7CHR0.1810.0060.187
hgu2beta7CHRLENGTHS0.0010.0000.001
hgu2beta7CHRLOC0.3650.0100.374
hgu2beta7ENZYME0.3250.0060.330
hgu2beta7ENZYME2PROBE0.0060.0010.007
hgu2beta7GENENAME0.4050.0100.415
hgu2beta7GO2.0970.0722.179
hgu2beta7GO2ALLPROBES0.6450.0190.667
hgu2beta7GO2PROBE0.0670.0130.081
hgu2beta7GRIF0.5520.0160.570
hgu2beta7LOCUSID0.1790.0020.181
hgu2beta7MAP0.5410.0060.546
hgu2beta7OMIM0.3120.0050.320
hgu2beta7ORGANISM0.0000.0010.000
hgu2beta7PATH0.4830.0020.489
hgu2beta7PATH2PROBE0.0050.0000.006
hgu2beta7PMID0.2670.0130.279
hgu2beta7PMID2PROBE2.4240.0502.490
hgu2beta7REFSEQ0.9420.0110.958
hgu2beta7SUMFUNC0.9510.0260.988
hgu2beta7SYMBOL0.3310.0130.375
hgu2beta7UNIGENE0.3830.0040.391