BioC experimental data: CHECK report for KEGGandMetacoreDzPathwaysGEO on moscato1

Package: KEGGandMetacoreDzPathwaysGEO

Version: 1.0.0

Command: rm -rf KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO.Rcheck && mkdir KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO_1.0.0.tar.gz >KEGGandMetacoreDzPathwaysGEO.Rcheck\00install.out 2>&1 && cp KEGGandMetacoreDzPathwaysGEO.Rcheck\00install.out KEGGandMetacoreDzPathwaysGEO-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir --install="check:KEGGandMetacoreDzPathwaysGEO-install.out" --force-multiarch --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_1.0.0.tar.gz

StartedAt: 2015-04-08 10:52:30 -0700 (Wed, 08 Apr 2015)

EndedAt: 2015-04-08 10:56:51 -0700 (Wed, 08 Apr 2015)

EllapsedTime: 260.4 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck

Warnings: 0

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### Running command:
###
###   rm -rf KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO.Rcheck && mkdir KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO_1.0.0.tar.gz >KEGGandMetacoreDzPathwaysGEO.Rcheck\00install.out 2>&1 && cp KEGGandMetacoreDzPathwaysGEO.Rcheck\00install.out KEGGandMetacoreDzPathwaysGEO-install.out  && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir --install="check:KEGGandMetacoreDzPathwaysGEO-install.out" --force-multiarch --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_1.0.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.0-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KEGGandMetacoreDzPathwaysGEO/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KEGGandMetacoreDzPathwaysGEO' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'KEGGandMetacoreDzPathwaysGEO' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 98.7Mb
  sub-directories of 1Mb or more:
    data  98.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [26s] OK
** running examples for arch 'x64' ... [27s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-3.0-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'KEGGandMetacoreDzPathwaysGEO' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'KEGGandMetacoreDzPathwaysGEO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KEGGandMetacoreDzPathwaysGEO' as KEGGandMetacoreDzPathwaysGEO_1.0.0.zip
* DONE (KEGGandMetacoreDzPathwaysGEO)

name	user	system	elapsed
GSE1145	0.48	0.03	0.52
GSE11906	3.45	0.08	3.52
GSE14924_CD4	0.37	0.01	0.41
GSE14924_CD8	0.34	0.02	0.36
GSE16759	0.39	0.00	0.39
GSE19420	0.33	0.00	0.32
GSE20164	0.09	0.00	0.10
GSE22780	0.32	0.00	0.31
GSE23878	0.84	0.06	0.90
GSE24739_G0	0.53	0.00	0.53
GSE24739_G1	0.54	0.00	0.55
GSE30153	0.66	0.00	0.65
GSE32676	1.01	0.01	1.03
GSE38666_epithelia	0.47	0.00	0.47
GSE38666_stroma	0.3	0.0	0.3
GSE4183	0.36	0.00	0.36
GSE42057	1.10	0.05	1.15
GSE7305	0.82	0.00	0.81
KEGGandMetacoreDzPathwaysGEO-package	0.87	0.00	0.88

name	user	system	elapsed
GSE1145	0.43	0.00	0.43
GSE11906	3.25	0.04	3.29
GSE14924_CD4	0.36	0.00	0.36
GSE14924_CD8	0.29	0.00	0.29
GSE16759	0.36	0.00	0.36
GSE19420	0.28	0.00	0.28
GSE20164	0.08	0.01	0.09
GSE22780	0.29	0.00	0.30
GSE23878	0.85	0.00	0.84
GSE24739_G0	0.46	0.02	0.49
GSE24739_G1	0.48	0.02	0.50
GSE30153	0.60	0.03	0.62
GSE32676	0.78	0.01	0.80
GSE38666_epithelia	0.40	0.02	0.42
GSE38666_stroma	0.25	0.01	0.27
GSE4183	0.31	0.00	0.31
GSE42057	1.02	0.02	1.03
GSE7305	0.71	0.01	0.73
KEGGandMetacoreDzPathwaysGEO-package	0.72	0.04	0.75