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BioC 3.0: BUILD report for DrugVsDisease on moscato1

This page was generated on 2015-04-10 09:48:33 -0700 (Fri, 10 Apr 2015).

Package 254/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DrugVsDisease 2.6.0
j. Saez-Rodriguez
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/DrugVsDisease
Last Changed Rev: 95439 / Revision: 102249
Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: DrugVsDisease
Version: 2.6.0
Command: chmod a+r DrugVsDisease -R && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DrugVsDisease
StartedAt: 2015-04-09 20:51:54 -0700 (Thu, 09 Apr 2015)
EndedAt: 2015-04-09 20:52:57 -0700 (Thu, 09 Apr 2015)
EllapsedTime: 63.4 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r DrugVsDisease -R && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DrugVsDisease
###
##############################################################################
##############################################################################


* checking for file 'DrugVsDisease/DESCRIPTION' ... OK
* preparing 'DrugVsDisease':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"D:/biocbld/bbs-3.0-bioc/R/bin/i386/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: affy
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall,
    clusterEvalQ, clusterExport, clusterMap,
    parApply, parCapply, parLapply, parLapplyLB,
    parRapply, parSapply, parSapplyLB

The following object is masked from 'package:stats':

    xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, append, as.data.frame, as.vector,
    cbind, colnames, do.call, duplicated, eval,
    evalq, get, intersect, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax,
    pmax.int, pmin, pmin.int, rank, rbind, rep.int,
    rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unlist, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view
    with 'browseVignettes()'. To cite Bioconductor,
    see 'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: limma

Attaching package: 'limma'

The following object is masked from 'package:BiocGenerics':

    plotMA

Loading required package: biomaRt
Loading required package: ArrayExpress
Loading required package: GEOquery
Setting options('download.file.method.GEOquery'='auto')
Loading required package: DrugVsDiseasedata
Loading required package: cMap2data

Attaching package: 'cMap2data'

The following object is masked from 'package:DrugVsDiseasedata':

    genelist

Loading required package: qvalue
Error : 1: failed to load HTTP resource


Error: processing vignette 'DrugVsDisease.Rnw' failed with diagnostics:
 chunk 2 
Error in .datafromAE(experiment = accession) : 
  object 'experimentAEset' not found
Execution halted