BioC 3.0: CHECK report for DTA on perceval

Package: DTA

Version: 2.12.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DTA_2.12.1.tar.gz

StartedAt: 2015-04-10 01:00:16 -0700 (Fri, 10 Apr 2015)

EndedAt: 2015-04-10 01:06:46 -0700 (Fri, 10 Apr 2015)

EllapsedTime: 389.1 seconds

RetCode: 0

Status:  OK

CheckDir: DTA.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DTA_2.12.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.0-bioc/meat/DTA.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DTA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DTA’ version ‘2.12.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DTA’ can be installed ... [2s/4s] OK
* checking installed package size ... NOTE
  installed size is  9.6Mb
  sub-directories of 1Mb or more:
    data   6.8Mb
    doc    2.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [341s/342s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
DTA.dynamic.generate 127.766 15.619 143.639
DTA.estimate          76.500  5.207  81.931
DTA.generate          65.579  4.142  69.925
DTA.dynamic.estimate  41.630  0.223  41.996
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-3.0-bioc/meat/DTA.Rcheck/00check.log’
for details.

* installing *source* package ‘DTA’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DTA)

name	user	system	elapsed
DTA-package	0	0	0
DTA.dynamic.estimate	41.630	0.223	41.996
DTA.dynamic.generate	127.766	15.619	143.639
DTA.estimate	76.500	5.207	81.931
DTA.generate	65.579	4.142	69.925
DTA.map.it	0.001	0.000	0.001
DTA.normalize	0.001	0.000	0.001
DTA.phenomat	0.002	0.001	0.003
DTA.plot.it	0.059	0.026	0.118
tls	2.078	0.724	2.805