BioC 3.0: CHECK report for DTA on oaxaca

Package: DTA

Version: 2.12.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DTA_2.12.1.tar.gz

StartedAt: 2015-04-09 23:05:57 -0700 (Thu, 09 Apr 2015)

EndedAt: 2015-04-09 23:11:18 -0700 (Thu, 09 Apr 2015)

EllapsedTime: 320.6 seconds

RetCode: 0

Status:  OK

CheckDir: DTA.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DTA_2.12.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.0-bioc/meat/DTA.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DTA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DTA’ version ‘2.12.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DTA’ can be installed ... [2s/2s] OK
* checking installed package size ... NOTE
  installed size is  9.6Mb
  sub-directories of 1Mb or more:
    data   6.8Mb
    doc    2.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [273s/277s] OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
DTA.dynamic.generate 97.850  8.194 106.947
DTA.estimate         64.486  2.693  68.453
DTA.generate         57.125  2.138  60.464
DTA.dynamic.estimate 37.396  0.170  37.897
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-3.0-bioc/meat/DTA.Rcheck/00check.log’
for details.

* installing *source* package ‘DTA’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DTA)

name	user	system	elapsed
DTA-package	0.000	0.000	0.001
DTA.dynamic.estimate	37.396	0.170	37.897
DTA.dynamic.generate	97.850	8.194	106.947
DTA.estimate	64.486	2.693	68.453
DTA.generate	57.125	2.138	60.464
DTA.map.it	0.001	0.000	0.000
DTA.normalize	0	0	0
DTA.phenomat	0.002	0.001	0.002
DTA.plot.it	0.044	0.016	0.121
tls	1.146	0.381	1.540