Back to the "Multiple platform build/check report" A  B  C [D] E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.0: CHECK report for DTA on moscato1

This page was generated on 2015-04-10 09:47:25 -0700 (Fri, 10 Apr 2015).

Package 256/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DTA 2.12.1
Bjoern Schwalb
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/DTA
Last Changed Rev: 99145 / Revision: 102249
Last Changed Date: 2015-02-06 11:13:45 -0800 (Fri, 06 Feb 2015)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: DTA
Version: 2.12.1
Command: rm -rf DTA.buildbin-libdir DTA.Rcheck && mkdir DTA.buildbin-libdir DTA.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DTA.buildbin-libdir DTA_2.12.1.tar.gz >DTA.Rcheck\00install.out 2>&1 && cp DTA.Rcheck\00install.out DTA-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=DTA.buildbin-libdir --install="check:DTA-install.out" --force-multiarch --no-vignettes --timings DTA_2.12.1.tar.gz
StartedAt: 2015-04-10 00:42:51 -0700 (Fri, 10 Apr 2015)
EndedAt: 2015-04-10 00:54:18 -0700 (Fri, 10 Apr 2015)
EllapsedTime: 687.2 seconds
RetCode: 0
Status:  OK  
CheckDir: DTA.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf DTA.buildbin-libdir DTA.Rcheck && mkdir DTA.buildbin-libdir DTA.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DTA.buildbin-libdir DTA_2.12.1.tar.gz >DTA.Rcheck\00install.out 2>&1 && cp DTA.Rcheck\00install.out DTA-install.out  && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=DTA.buildbin-libdir --install="check:DTA-install.out" --force-multiarch --no-vignettes --timings DTA_2.12.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.0-bioc/meat/DTA.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DTA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DTA' version '2.12.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DTA' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 12.2Mb
  sub-directories of 1Mb or more:
    data   6.8Mb
    doc    5.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [280s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
DTA.dynamic.generate 95.11   4.30   99.48
DTA.estimate         71.40   1.36   72.79
DTA.generate         61.99   1.03   63.34
DTA.dynamic.estimate 41.52   0.02   41.53
** running examples for arch 'x64' ... [350s] OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
DTA.dynamic.generate 130.96   3.98  134.94
DTA.estimate          85.27   1.11   86.38
DTA.generate          67.29   0.78   68.06
DTA.dynamic.estimate  57.47   0.00   57.47
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-3.0-bioc/meat/DTA.Rcheck/00check.log'
for details.

DTA.Rcheck/00install.out:


install for i386

* installing *source* package 'DTA' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'DTA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DTA' as DTA_2.12.1.zip
* DONE (DTA)

DTA.Rcheck/examples_i386/DTA-Ex.timings:

nameusersystemelapsed
DTA-package000
DTA.dynamic.estimate41.52 0.0241.53
DTA.dynamic.generate95.11 4.3099.48
DTA.estimate71.40 1.3672.79
DTA.generate61.99 1.0363.34
DTA.map.it000
DTA.normalize000
DTA.phenomat000
DTA.plot.it0.020.030.04
tls1.090.141.23

DTA.Rcheck/examples_x64/DTA-Ex.timings:

nameusersystemelapsed
DTA-package000
DTA.dynamic.estimate57.47 0.0057.47
DTA.dynamic.generate130.96 3.98134.94
DTA.estimate85.27 1.1186.38
DTA.generate67.29 0.7868.06
DTA.map.it000
DTA.normalize000
DTA.phenomat0.010.000.02
DTA.plot.it0.030.010.05
tls1.270.111.37