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yeastGSData 0.1.7
R. Gentleman
Snapshot Date: 2012-03-23 11:15:09 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/yeastGSData
Last Changed Rev: 1836 / Revision: 2028
Last Changed Date: 2011-11-14 17:11:10 -0800 (Mon, 14 Nov 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: yeastGSData
Version: 0.1.7
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings yeastGSData_0.1.7.tar.gz
StartedAt: 2012-03-23 14:14:17 -0700 (Fri, 23 Mar 2012)
EndedAt: 2012-03-23 14:17:23 -0700 (Fri, 23 Mar 2012)
EllapsedTime: 185.8 seconds
RetCode: 0
Status:  OK 
CheckDir: yeastGSData.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-data-experiment/meat/yeastGSData.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘yeastGSData/DESCRIPTION’ ... OK
* this is package ‘yeastGSData’ version ‘0.1.7’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘yeastGSData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 65.2Mb
  sub-directories of 1Mb or more:
    extdata  64.2Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: BayesFactorNGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorNGS.Rd:26-27: Dropping empty section \references
prepare_Rd: BayesFactorPGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorPGS.Rd:26-27: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                     old_size new_size compress
  BayesFactorNGS.rda     46Kb     18Kb       xz
  BayesFactorPGS.rda     70Kb     32Kb       xz
  MIPSGS.rda             15Kb      9Kb       xz
  Mpact.rda             199Kb    135Kb    bzip2
  NEGGS.rda             600Kb     40Kb       xz
* checking examples ... OK
* checking PDF version of manual ... OK

yeastGSData.Rcheck/00install.out:

* installing *source* package ‘yeastGSData’ ...
** data
** inst
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (yeastGSData)

yeastGSData.Rcheck/yeastGSData-Ex.timings:

nameusersystemelapsed
BayesFactorNGS0.0280.0000.028
BayesFactorPGS0.0080.0000.012
BinaryGS0.0000.0000.003
MIPSGS0.0160.0000.016
Mpact0.0520.0000.053
MpactEvidenceCodes0.0040.0000.002
NEGGS4.8800.2485.127
POSPS0.000.000.02
PRS0.0040.0000.001