Package: pumadata

Version: 1.0.5

Command: rm -rf pumadata.buildbin-libdir && mkdir pumadata.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pumadata.buildbin-libdir pumadata_1.0.5.tar.gz >pumadata-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=pumadata.buildbin-libdir --install="check:pumadata-install.out" --force-multiarch --no-vignettes --timings pumadata_1.0.5.tar.gz && mv pumadata.buildbin-libdir/* pumadata.Rcheck/ && rmdir pumadata.buildbin-libdir

StartedAt: 2012-03-23 14:46:59 -0700 (Fri, 23 Mar 2012)

EndedAt: 2012-03-23 14:49:41 -0700 (Fri, 23 Mar 2012)

EllapsedTime: 161.5 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: pumadata.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.9-data-experiment/meat/pumadata.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pumadata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pumadata' version '1.0.5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'pumadata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 15.5Mb
  sub-directories of 1Mb or more:
    data  15.3Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Invalid citation information in 'inst/CITATION':
  arguments imply differing number of rows: 1, 0
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'pumadata/R/zzz.R':
  .onLoad calls:
    require(Biobase)

Package startup functions should not change the search path.
See section 'Good practice' in ?.onAttach.

* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                         old_size new_size compress
  affybatch.estrogen.rda    8.3Mb    5.2Mb       xz
  eset_estrogen_comb.rda    860Kb    748Kb       xz
  eset_estrogen_rma.rda     810Kb    698Kb       xz
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.9-data-experiment/meat/pumadata.Rcheck/00check.log'
for details

install for i386

* installing *source* package 'pumadata' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'pumadata.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'pumadata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pumadata' as pumadata_1.0.5.zip

* DONE (pumadata)