>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=predictionet.buildbin-libdir predictionet_1.0.0.tar.gz'
>>>>>>>
* installing *source* package 'predictionet' ...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c foo_mrmr.cpp -o foo_mrmr.o
foo_mrmr.cpp: In function 'double get_correlation(double*, int*, int, int, int)':
foo_mrmr.cpp:13: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp:23: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp: In function 'void build_mim_subset(double*, double*, int*, int, int, int*, int)':
foo_mrmr.cpp:50: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp:51: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp:57: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp:59: warning: comparison between signed and unsigned integer expressions
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c mrnet_adapted.cpp -o mrnet_adapted.o
mrnet_adapted.cpp: In function 'SEXPREC* mrnet_adapted(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_adapted.cpp:58: warning: comparison between signed and unsigned integer expressions
mrnet_adapted.cpp:103: warning: comparison between signed and unsigned integer expressions
mrnet_adapted.cpp:131: warning: comparison between signed and unsigned integer expressions
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c mrnet_ensemble_standalone.cpp -o mrnet_ensemble_standalone.o
mrnet_ensemble_standalone.cpp: In function 'void remove_equiv_subtrees(tree<int, std::allocator<tree_node_<int> > >&, tree<double, std::allocator<tree_node_<double> > >&)':
mrnet_ensemble_standalone.cpp:24: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:42: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:47: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:60: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:65: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp: In function 'int verify_equivalentset_nparents(tree<int, std::allocator<tree_node_<int> > >&, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, tree<double, std::allocator<tree_node_<double> > >&, int)':
mrnet_ensemble_standalone.cpp:111: warning: unused variable 'found'
mrnet_ensemble_standalone.cpp: In function 'int verify_equivalentset(tree<int, std::allocator<tree_node_<int> > >&, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, int, int*, int*)':
mrnet_ensemble_standalone.cpp:283: warning: unused variable 'rootdepth'
mrnet_ensemble_standalone.cpp: In function 'void build_tree_int(tree<int, std::allocator<tree_node_<int> > >&, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, int*, int, int)':
mrnet_ensemble_standalone.cpp:304: warning: unused variable 'rootdepth'
mrnet_ensemble_standalone.cpp: In function 'void bootstrap_mrmr_fix(double&, double&, double*, int*, int, int, int, int, int, int, int, int*)':
mrnet_ensemble_standalone.cpp:384: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:377: warning: unused variable 'boot_val'
mrnet_ensemble_standalone.cpp: In function 'void bootstrap_mrmr(double&, double&, double*, int*, int, int, int, int, int, int, int, int*)':
mrnet_ensemble_standalone.cpp:414: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:417: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:426: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:433: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp: In function 'void bootstrap_tree(tree<int, std::allocator<tree_node_<int> > >&, tree<double, std::allocator<tree_node_<double> > >&, double*, int*, int, int, int)':
mrnet_ensemble_standalone.cpp:507: warning: unused variable 'cnt_back'
mrnet_ensemble_standalone.cpp:442: warning: unused variable 'nsub'
mrnet_ensemble_standalone.cpp: In function 'double mrnet_onegene(double*, int, int, int*, int, int)':
mrnet_ensemble_standalone.cpp:569: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:560: warning: unused variable 'max_val'
mrnet_ensemble_standalone.cpp: In function 'void mrmr_ensemble_one_gene(tree<int, std::allocator<tree_node_<int> > >&, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, double*, int*, int, int, int, int, int, int, double)':
mrnet_ensemble_standalone.cpp:600: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:658: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:665: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:668: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:672: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:677: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:689: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:586: warning: unused variable 'nprev_sel'
mrnet_ensemble_standalone.cpp: In function 'SEXPREC* mrmr_ensemble(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_ensemble_standalone.cpp:760: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:799: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:813: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:819: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:822: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:777: warning: unused variable 'cnt2'
mrnet_ensemble_standalone.cpp:780: warning: unused variable 'rootdepth'
mrnet_ensemble_standalone.cpp:794: warning: unused variable 'ind'
mrnet_ensemble_standalone.cpp:722: warning: unused variable 'res_all'
mrnet_ensemble_standalone.cpp:722: warning: unused variable 'res_all2'
mrnet_ensemble_standalone.cpp:723: warning: unused variable 'vec_tmp'
mrnet_ensemble_standalone.cpp: In function 'void mrmr_ensemble_one_gene_remove(tree<int, std::allocator<tree_node_<int> > >&, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, double*, int*, int, int, int, int, int, int, double)':
mrnet_ensemble_standalone.cpp:860: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:904: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:912: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:915: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:919: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:848: warning: unused variable 'tmp_val_max_ind'
mrnet_ensemble_standalone.cpp:848: warning: unused variable 'prev_sel_tmp'
mrnet_ensemble_standalone.cpp:849: warning: unused variable 'vec_sort'
mrnet_ensemble_standalone.cpp: In function 'SEXPREC* mrmr_ensemble_remove(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_ensemble_standalone.cpp:1029: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1066: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1080: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1085: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1089: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1046: warning: unused variable 'cnt2'
mrnet_ensemble_standalone.cpp:1049: warning: unused variable 'rootdepth'
mrnet_ensemble_standalone.cpp:1063: warning: unused variable 'ind'
mrnet_ensemble_standalone.cpp:992: warning: unused variable 'res_all'
mrnet_ensemble_standalone.cpp:992: warning: unused variable 'res_all2'
mrnet_ensemble_standalone.cpp:993: warning: unused variable 'vec_tmp'
mrnet_ensemble_standalone.cpp:1062: warning: 'res_old' may be used uninitialized in this function
mrnet_ensemble_standalone.cpp:996: warning: 'Rres' may be used uninitialized in this function
mrnet_ensemble_standalone.cpp: In function 'SEXPREC* mrmr_ensemble(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_ensemble_standalone.cpp:726: warning: 'Rres' may be used uninitialized in this function
mrnet_ensemble_standalone.cpp:793: warning: 'res_old' may be used uninitialized in this function
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o predictionet.so foo_mrmr.o mrnet_adapted.o mrnet_ensemble_standalone.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/predictionet.buildbin-libdir/predictionet/libs/i386
** R
** data
** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'predictionet.Rnw'
** testing if installed package can be loaded
* DONE (predictionet)
>>>>>>>
>>>>>>> FIXING LINKS FOR predictionet.buildbin-libdir/predictionet/libs/i386/predictionet.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "predictionet.buildbin-libdir/predictionet/libs/i386/predictionet.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "predictionet.buildbin-libdir/predictionet/libs/i386/predictionet.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "predictionet.buildbin-libdir/predictionet/libs/i386/predictionet.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "predictionet.buildbin-libdir/predictionet/libs/i386/predictionet.so"
>>>>>>>
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=predictionet.buildbin-libdir --libs-only predictionet_1.0.0.tar.gz'
>>>>>>>
* installing *source* package 'predictionet' ...
** libs
*** arch - ppc
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c foo_mrmr.cpp -o foo_mrmr.o
foo_mrmr.cpp: In function 'double get_correlation(double*, int*, int, int, int)':
foo_mrmr.cpp:13: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp:23: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp: In function 'void build_mim_subset(double*, double*, int*, int, int, int*, int)':
foo_mrmr.cpp:50: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp:51: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp:57: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp:59: warning: comparison between signed and unsigned integer expressions
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c mrnet_adapted.cpp -o mrnet_adapted.o
mrnet_adapted.cpp: In function 'SEXPREC* mrnet_adapted(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_adapted.cpp:58: warning: comparison between signed and unsigned integer expressions
mrnet_adapted.cpp:103: warning: comparison between signed and unsigned integer expressions
mrnet_adapted.cpp:131: warning: comparison between signed and unsigned integer expressions
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c mrnet_ensemble_standalone.cpp -o mrnet_ensemble_standalone.o
mrnet_ensemble_standalone.cpp: In function 'void remove_equiv_subtrees(tree<int, std::allocator<tree_node_<int> > >&, tree<double, std::allocator<tree_node_<double> > >&)':
mrnet_ensemble_standalone.cpp:24: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:42: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:47: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:60: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:65: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp: In function 'int verify_equivalentset_nparents(tree<int, std::allocator<tree_node_<int> > >&, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, tree<double, std::allocator<tree_node_<double> > >&, int)':
mrnet_ensemble_standalone.cpp:111: warning: unused variable 'found'
mrnet_ensemble_standalone.cpp: In function 'int verify_equivalentset(tree<int, std::allocator<tree_node_<int> > >&, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, int, int*, int*)':
mrnet_ensemble_standalone.cpp:283: warning: unused variable 'rootdepth'
mrnet_ensemble_standalone.cpp: In function 'void build_tree_int(tree<int, std::allocator<tree_node_<int> > >&, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, int*, int, int)':
mrnet_ensemble_standalone.cpp:304: warning: unused variable 'rootdepth'
mrnet_ensemble_standalone.cpp: In function 'void bootstrap_mrmr_fix(double&, double&, double*, int*, int, int, int, int, int, int, int, int*)':
mrnet_ensemble_standalone.cpp:384: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:377: warning: unused variable 'boot_val'
mrnet_ensemble_standalone.cpp: In function 'void bootstrap_mrmr(double&, double&, double*, int*, int, int, int, int, int, int, int, int*)':
mrnet_ensemble_standalone.cpp:414: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:417: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:426: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:433: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp: In function 'void bootstrap_tree(tree<int, std::allocator<tree_node_<int> > >&, tree<double, std::allocator<tree_node_<double> > >&, double*, int*, int, int, int)':
mrnet_ensemble_standalone.cpp:507: warning: unused variable 'cnt_back'
mrnet_ensemble_standalone.cpp:442: warning: unused variable 'nsub'
mrnet_ensemble_standalone.cpp: In function 'double mrnet_onegene(double*, int, int, int*, int, int)':
mrnet_ensemble_standalone.cpp:569: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:560: warning: unused variable 'max_val'
mrnet_ensemble_standalone.cpp: In function 'void mrmr_ensemble_one_gene(tree<int, std::allocator<tree_node_<int> > >&, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, double*, int*, int, int, int, int, int, int, double)':
mrnet_ensemble_standalone.cpp:600: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:658: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:665: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:668: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:672: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:677: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:689: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:586: warning: unused variable 'nprev_sel'
mrnet_ensemble_standalone.cpp: In function 'SEXPREC* mrmr_ensemble(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_ensemble_standalone.cpp:760: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:799: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:813: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:819: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:822: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:777: warning: unused variable 'cnt2'
mrnet_ensemble_standalone.cpp:780: warning: unused variable 'rootdepth'
mrnet_ensemble_standalone.cpp:794: warning: unused variable 'ind'
mrnet_ensemble_standalone.cpp:722: warning: unused variable 'res_all'
mrnet_ensemble_standalone.cpp:722: warning: unused variable 'res_all2'
mrnet_ensemble_standalone.cpp:723: warning: unused variable 'vec_tmp'
mrnet_ensemble_standalone.cpp: In function 'void mrmr_ensemble_one_gene_remove(tree<int, std::allocator<tree_node_<int> > >&, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, double*, int*, int, int, int, int, int, int, double)':
mrnet_ensemble_standalone.cpp:860: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:904: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:912: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:915: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:919: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:848: warning: unused variable 'tmp_val_max_ind'
mrnet_ensemble_standalone.cpp:848: warning: unused variable 'prev_sel_tmp'
mrnet_ensemble_standalone.cpp:849: warning: unused variable 'vec_sort'
mrnet_ensemble_standalone.cpp: In function 'SEXPREC* mrmr_ensemble_remove(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_ensemble_standalone.cpp:1029: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1066: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1080: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1085: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1089: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1046: warning: unused variable 'cnt2'
mrnet_ensemble_standalone.cpp:1049: warning: unused variable 'rootdepth'
mrnet_ensemble_standalone.cpp:1063: warning: unused variable 'ind'
mrnet_ensemble_standalone.cpp:992: warning: unused variable 'res_all'
mrnet_ensemble_standalone.cpp:992: warning: unused variable 'res_all2'
mrnet_ensemble_standalone.cpp:993: warning: unused variable 'vec_tmp'
mrnet_ensemble_standalone.cpp: In function 'SEXPREC* mrmr_ensemble(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_ensemble_standalone.cpp:726: warning: 'Rres' may be used uninitialized in this function
mrnet_ensemble_standalone.cpp:793: warning: 'res_old' may be used uninitialized in this function
mrnet_ensemble_standalone.cpp: In function 'SEXPREC* mrmr_ensemble_remove(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_ensemble_standalone.cpp:1062: warning: 'res_old' may be used uninitialized in this function
mrnet_ensemble_standalone.cpp:996: warning: 'Rres' may be used uninitialized in this function
g++ -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o predictionet.so foo_mrmr.o mrnet_adapted.o mrnet_ensemble_standalone.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/predictionet.buildbin-libdir/predictionet/libs/ppc
* DONE (predictionet)
>>>>>>>
>>>>>>> FIXING LINKS FOR predictionet.buildbin-libdir/predictionet/libs/ppc/predictionet.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "predictionet.buildbin-libdir/predictionet/libs/ppc/predictionet.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "predictionet.buildbin-libdir/predictionet/libs/ppc/predictionet.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "predictionet.buildbin-libdir/predictionet/libs/ppc/predictionet.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "predictionet.buildbin-libdir/predictionet/libs/ppc/predictionet.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=predictionet.buildbin-libdir --libs-only predictionet_1.0.0.tar.gz'
>>>>>>>
* installing *source* package 'predictionet' ...
** libs
*** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c foo_mrmr.cpp -o foo_mrmr.o
foo_mrmr.cpp: In function 'double get_correlation(double*, int*, int, int, int)':
foo_mrmr.cpp:13: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp:23: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp: In function 'void build_mim_subset(double*, double*, int*, int, int, int*, int)':
foo_mrmr.cpp:50: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp:51: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp:57: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp:59: warning: comparison between signed and unsigned integer expressions
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c mrnet_adapted.cpp -o mrnet_adapted.o
mrnet_adapted.cpp: In function 'SEXPREC* mrnet_adapted(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_adapted.cpp:58: warning: comparison between signed and unsigned integer expressions
mrnet_adapted.cpp:103: warning: comparison between signed and unsigned integer expressions
mrnet_adapted.cpp:131: warning: comparison between signed and unsigned integer expressions
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c mrnet_ensemble_standalone.cpp -o mrnet_ensemble_standalone.o
mrnet_ensemble_standalone.cpp: In function 'void remove_equiv_subtrees(tree<int, std::allocator<tree_node_<int> > >&, tree<double, std::allocator<tree_node_<double> > >&)':
mrnet_ensemble_standalone.cpp:24: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:42: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:47: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:60: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:65: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp: In function 'int verify_equivalentset_nparents(tree<int, std::allocator<tree_node_<int> > >&, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, tree<double, std::allocator<tree_node_<double> > >&, int)':
mrnet_ensemble_standalone.cpp:111: warning: unused variable 'found'
mrnet_ensemble_standalone.cpp: In function 'int verify_equivalentset(tree<int, std::allocator<tree_node_<int> > >&, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, int, int*, int*)':
mrnet_ensemble_standalone.cpp:283: warning: unused variable 'rootdepth'
mrnet_ensemble_standalone.cpp: In function 'void build_tree_int(tree<int, std::allocator<tree_node_<int> > >&, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, int*, int, int)':
mrnet_ensemble_standalone.cpp:304: warning: unused variable 'rootdepth'
mrnet_ensemble_standalone.cpp: In function 'void bootstrap_mrmr_fix(double&, double&, double*, int*, int, int, int, int, int, int, int, int*)':
mrnet_ensemble_standalone.cpp:384: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:377: warning: unused variable 'boot_val'
mrnet_ensemble_standalone.cpp: In function 'void bootstrap_mrmr(double&, double&, double*, int*, int, int, int, int, int, int, int, int*)':
mrnet_ensemble_standalone.cpp:414: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:417: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:426: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:433: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp: In function 'void bootstrap_tree(tree<int, std::allocator<tree_node_<int> > >&, tree<double, std::allocator<tree_node_<double> > >&, double*, int*, int, int, int)':
mrnet_ensemble_standalone.cpp:507: warning: unused variable 'cnt_back'
mrnet_ensemble_standalone.cpp:442: warning: unused variable 'nsub'
mrnet_ensemble_standalone.cpp: In function 'double mrnet_onegene(double*, int, int, int*, int, int)':
mrnet_ensemble_standalone.cpp:569: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:560: warning: unused variable 'max_val'
mrnet_ensemble_standalone.cpp: In function 'void mrmr_ensemble_one_gene(tree<int, std::allocator<tree_node_<int> > >&, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, double*, int*, int, int, int, int, int, int, double)':
mrnet_ensemble_standalone.cpp:600: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:658: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:665: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:668: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:672: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:677: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:689: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:586: warning: unused variable 'nprev_sel'
mrnet_ensemble_standalone.cpp: In function 'SEXPREC* mrmr_ensemble(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_ensemble_standalone.cpp:760: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:799: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:813: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:819: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:822: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:777: warning: unused variable 'cnt2'
mrnet_ensemble_standalone.cpp:780: warning: unused variable 'rootdepth'
mrnet_ensemble_standalone.cpp:794: warning: unused variable 'ind'
mrnet_ensemble_standalone.cpp:722: warning: unused variable 'res_all'
mrnet_ensemble_standalone.cpp:722: warning: unused variable 'res_all2'
mrnet_ensemble_standalone.cpp:723: warning: unused variable 'vec_tmp'
mrnet_ensemble_standalone.cpp: In function 'void mrmr_ensemble_one_gene_remove(tree<int, std::allocator<tree_node_<int> > >&, tree<int, std::allocator<tree_node_<int> > >::pre_order_iterator, double*, int*, int, int, int, int, int, int, double)':
mrnet_ensemble_standalone.cpp:860: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:904: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:912: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:915: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:919: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:848: warning: unused variable 'tmp_val_max_ind'
mrnet_ensemble_standalone.cpp:848: warning: unused variable 'prev_sel_tmp'
mrnet_ensemble_standalone.cpp:849: warning: unused variable 'vec_sort'
mrnet_ensemble_standalone.cpp: In function 'SEXPREC* mrmr_ensemble_remove(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_ensemble_standalone.cpp:1029: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1066: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1080: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1085: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1089: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1046: warning: unused variable 'cnt2'
mrnet_ensemble_standalone.cpp:1049: warning: unused variable 'rootdepth'
mrnet_ensemble_standalone.cpp:1063: warning: unused variable 'ind'
mrnet_ensemble_standalone.cpp:992: warning: unused variable 'res_all'
mrnet_ensemble_standalone.cpp:992: warning: unused variable 'res_all2'
mrnet_ensemble_standalone.cpp:993: warning: unused variable 'vec_tmp'
mrnet_ensemble_standalone.cpp:1062: warning: 'res_old' may be used uninitialized in this function
mrnet_ensemble_standalone.cpp:996: warning: 'Rres' may be used uninitialized in this function
mrnet_ensemble_standalone.cpp: In function 'SEXPREC* mrmr_ensemble(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_ensemble_standalone.cpp:793: warning: 'res_old' may be used uninitialized in this function
mrnet_ensemble_standalone.cpp:726: warning: 'Rres' may be used uninitialized in this function
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o predictionet.so foo_mrmr.o mrnet_adapted.o mrnet_ensemble_standalone.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/predictionet.buildbin-libdir/predictionet/libs/x86_64
* DONE (predictionet)
>>>>>>>
>>>>>>> FIXING LINKS FOR predictionet.buildbin-libdir/predictionet/libs/x86_64/predictionet.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "predictionet.buildbin-libdir/predictionet/libs/x86_64/predictionet.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "predictionet.buildbin-libdir/predictionet/libs/x86_64/predictionet.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "predictionet.buildbin-libdir/predictionet/libs/x86_64/predictionet.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "predictionet.buildbin-libdir/predictionet/libs/x86_64/predictionet.so"