Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L [M] N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 326/514HostnameOS / ArchBUILDCHECKBUILD BIN
mosaics 1.2.5
Dongjun Chung
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/mosaics
Last Changed Rev: 62717 / Revision: 64395
Last Changed Date: 2012-02-11 20:10:34 -0800 (Sat, 11 Feb 2012)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: mosaics
Version: 1.2.5
Command: rm -rf mosaics.buildbin-libdir && mkdir mosaics.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mosaics_1.2.5.tar.gz /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R mosaics.buildbin-libdir
StartedAt: 2012-03-24 05:26:48 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 05:27:52 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 63.2 seconds
RetCode: 0
Status:  OK 
PackageFile: mosaics_1.2.5.tgz
PackageFileSize: 557.1 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=mosaics.buildbin-libdir mosaics_1.2.5.tar.gz'
>>>>>>> 

* installing *source* package 'mosaics' ...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcpp/include"   -fPIC  -g -O2 -Wall -fasm-blocks -c convolution_1S.cpp -o convolution_1S.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcpp/include"   -fPIC  -g -O2 -Wall -fasm-blocks -c convolution_2S.cpp -o convolution_2S.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o mosaics.so convolution_1S.o convolution_2S.o /Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcpp/lib/i386/libRcpp.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/mosaics.buildbin-libdir/mosaics/libs/i386
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'print' from package 'base' in package 'mosaics'
Creating a generic function for 'plot' from package 'graphics' in package 'mosaics'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'mosaics-example.Rnw' 
** testing if installed package can be loaded

* DONE (mosaics)


>>>>>>> 
>>>>>>> FIXING LINKS FOR mosaics.buildbin-libdir/mosaics/libs/i386/mosaics.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "mosaics.buildbin-libdir/mosaics/libs/i386/mosaics.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "mosaics.buildbin-libdir/mosaics/libs/i386/mosaics.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "mosaics.buildbin-libdir/mosaics/libs/i386/mosaics.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "mosaics.buildbin-libdir/mosaics/libs/i386/mosaics.so"


>>>>>>> 
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=mosaics.buildbin-libdir --libs-only mosaics_1.2.5.tar.gz'
>>>>>>> 

* installing *source* package 'mosaics' ...
** libs
*** arch - ppc
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcpp/include"   -fPIC  -g -O2 -Wall -fasm-blocks -c convolution_1S.cpp -o convolution_1S.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcpp/include"   -fPIC  -g -O2 -Wall -fasm-blocks -c convolution_2S.cpp -o convolution_2S.o
g++ -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o mosaics.so convolution_1S.o convolution_2S.o /Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcpp/lib/ppc/libRcpp.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/mosaics.buildbin-libdir/mosaics/libs/ppc

* DONE (mosaics)


>>>>>>> 
>>>>>>> FIXING LINKS FOR mosaics.buildbin-libdir/mosaics/libs/ppc/mosaics.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "mosaics.buildbin-libdir/mosaics/libs/ppc/mosaics.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "mosaics.buildbin-libdir/mosaics/libs/ppc/mosaics.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "mosaics.buildbin-libdir/mosaics/libs/ppc/mosaics.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "mosaics.buildbin-libdir/mosaics/libs/ppc/mosaics.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=mosaics.buildbin-libdir --libs-only mosaics_1.2.5.tar.gz'
>>>>>>> 

* installing *source* package 'mosaics' ...
** libs
*** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcpp/include"   -fPIC  -g -O2 -Wall -fasm-blocks -c convolution_1S.cpp -o convolution_1S.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcpp/include"   -fPIC  -g -O2 -Wall -fasm-blocks -c convolution_2S.cpp -o convolution_2S.o
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o mosaics.so convolution_1S.o convolution_2S.o /Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcpp/lib/x86_64/libRcpp.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/mosaics.buildbin-libdir/mosaics/libs/x86_64

* DONE (mosaics)


>>>>>>> 
>>>>>>> FIXING LINKS FOR mosaics.buildbin-libdir/mosaics/libs/x86_64/mosaics.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "mosaics.buildbin-libdir/mosaics/libs/x86_64/mosaics.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "mosaics.buildbin-libdir/mosaics/libs/x86_64/mosaics.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "mosaics.buildbin-libdir/mosaics/libs/x86_64/mosaics.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "mosaics.buildbin-libdir/mosaics/libs/x86_64/mosaics.so"