Package: minfi

Version: 1.0.0

Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings minfi_1.0.0.tar.gz

StartedAt: 2012-03-24 01:31:41 -0700 (Sat, 24 Mar 2012)

EndedAt: 2012-03-24 01:36:37 -0700 (Sat, 24 Mar 2012)

EllapsedTime: 295.9 seconds

RetCode: 0

Status:  OK

CheckDir: minfi.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/minfi.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘minfi/DESCRIPTION’ ... OK
* this is package ‘minfi’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘minfi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘minfi’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘minfi.Rnw’ 
** testing if installed package can be loaded

* DONE (minfi)

name	user	system	elapsed
IlluminaMethylationManifest-class	8.685	0.212	9.015
MethylSet-class	0.000	0.000	0.002
RGChannelSet-class	0.000	0.000	0.001
controlStripPlot	7.780	0.204	8.415
densityBeanPlot	26.674	0.444	27.254
densityPlot	17.621	0.144	18.220
detectionP	12.197	0.024	12.218
dmpFinder	2.208	0.096	2.471
getProbeData	0.044	0.004	0.047
logit2	0	0	0
mdsPlot	3.812	0.060	3.878
plotCpg	0.268	0.012	0.291
preprocessIllumina	15.117	0.076	15.211
preprocessRaw	6.808	0.028	6.837
qcReport	0.044	0.000	0.041
read.450k	12.293	0.056	12.439
read.450k.exp	14.005	0.040	14.075
read.450k.sheet	0.060	0.000	0.062