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Package 298/514HostnameOS / ArchBUILDCHECKBUILD BIN
marray 1.32.0
Yee Hwa (Jean) Yang
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/marray
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: marray
Version: 1.32.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings marray_1.32.0.tar.gz
StartedAt: 2012-03-24 01:20:12 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 01:21:42 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 89.8 seconds
RetCode: 0
Status:  OK 
CheckDir: marray.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/marray.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘marray/DESCRIPTION’ ... OK
* this is package ‘marray’ version ‘1.32.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘marray’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.0Mb
  sub-directories of 1Mb or more:
    doc         1.6Mb
    swirldata   5.5Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
findID: no visible binding for global variable ‘gnames’
findID: no visible global function definition for ‘phenoData’
htmlPage: no visible binding for global variable ‘Gnames’
maTwoSamples: no visible global function definition for ‘gpTools’
scale.na: no visible global function definition for ‘applyy’
widget.TwoSamples: no visible global function definition for
  ‘widgetRender’
widget.mapGeneInfo: no visible global function definition for
  ‘widgetRender’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

marray.Rcheck/00install.out:

* installing *source* package ‘marray’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘marray.Rnw’ 
   ‘marrayClasses.Rnw’ 
   ‘marrayClassesShort.Rnw’ 
   ‘marrayInput.Rnw’ 
   ‘marrayNorm.Rnw’ 
   ‘marrayPlots.Rnw’ 
** testing if installed package can be loaded

* DONE (marray)

marray.Rcheck/marray-Ex.timings:

nameusersystemelapsed
boxplot0.8800.0280.908
checkTargetInfo0.2160.0000.216
dim0.0040.0000.002
findID0.1640.0160.179
htmlPage0.1360.0120.146
image0.0680.0080.077
ma2D000
maBoxplot000
maColorBar0.020.000.02
maCompCoord0.0000.0000.001
maCompInd0.0040.0000.004
maCompLayout0.0040.0000.007
maCompNormA000
maCompPlate0.0080.0000.007
maCoord2Ind0.0040.0000.003
maDefaultPar000
maDotsDefaults0.0040.0000.002
maDotsMatch0.0000.0000.002
maGenControls0.1920.0000.194
maGeneTable0.1760.0000.175
maImage1.4160.0161.432
maImage.func000
maInd2Coord0.0040.0000.003
maLegendLines000
maLoess000
maLoessLines000
maMAD000
maMed000
maNorm2.7920.0002.797
maNorm2D000
maNormLoess000
maNormMAD000
maNormMain17.601 0.01217.670
maNormMed000
maNormScale0.6920.0000.691
maNum2Logic000
maPalette0.0280.0000.025
maPlot2.8440.0042.852
maPlot.func0.0000.0000.001
maSelectGnames0.0040.0000.006
maText000
maTop000
mapGeneInfo0.0000.0000.001
marrayInfo-class0.0000.0000.001
marrayLayout-class000
marrayNorm-class0.5480.0040.549
marrayRaw-class0.1600.0000.161
opVersionID0.0040.0000.001
plotMA2.7120.0122.759
read.Galfile0.0760.0040.083
read.marrayInfo0.0400.0000.042
read.marrayLayout0.0810.0040.086
read.marrayRaw3.0000.0203.029
rm.na000
stat.confband.text0.6840.0040.693
stat.gnames0.3640.0080.371
write.list0.1560.0040.159
write.marray0.1080.0000.105
write.xls0.1320.0000.132