Package: iFlow

Version: 2.6.0

Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings iFlow_2.6.0.tar.gz

StartedAt: 2012-03-24 01:02:55 -0700 (Sat, 24 Mar 2012)

EndedAt: 2012-03-24 01:04:49 -0700 (Sat, 24 Mar 2012)

EllapsedTime: 113.9 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: iFlow.Rcheck

Warnings: 1

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/iFlow.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘iFlow/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘iFlow’ version ‘2.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘iFlow’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 12.1Mb
  sub-directories of 1Mb or more:
    doc  11.8Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ask.dialog: no visible binding for global variable ‘selected.channels’
ask.graphics.details: no visible binding for global variable
  ‘selected.channels’
openGraphics: no visible binding for global variable ‘value.y’
openGraphics: no visible binding for global variable ‘value.x’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... WARNING
Found the following significant warnings:

  Warning: ‘method’ is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/iFlow.Rcheck/00check.log’
for details

* installing *source* package ‘iFlow’ ...
** R
** inst
** preparing package for lazy loading
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Warning: replacing previous import ‘.__C__character’ when loading ‘methods’

--------

for references have a look at
citation('robCompositions')    
--------

Xlib:  extension "RANDR" missing on display ":13780.0".
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘iflow.Rnw’ 
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

--------

for references have a look at
citation('robCompositions')    
--------

Xlib:  extension "RANDR" missing on display ":13780.0".
Warning message:
replacing previous import ‘.__C__character’ when loading ‘methods’ 

* DONE (iFlow)

name	user	system	elapsed
GlobalLists	0.004	0.000	0.007
activeFlowset	0	0	0
activeNodeID	0	0	0
activeNodeName	0	0	0
activeWorkflow	0	0	0
getNewName	0	0	0
guiEnv	0	0	0
iflow	0.732	0.032	0.953
isAnyActive	0	0	0
show.message	0	0	0