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Package 221/514HostnameOS / ArchBUILDCHECKBUILD BIN
globaltest 5.8.1
Jelle Goeman
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/globaltest
Last Changed Rev: 60260 / Revision: 64395
Last Changed Date: 2011-11-11 05:32:56 -0800 (Fri, 11 Nov 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: globaltest
Version: 5.8.1
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings globaltest_5.8.1.tar.gz
StartedAt: 2012-03-24 00:45:23 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 00:48:34 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 190.6 seconds
RetCode: 0
Status:  OK 
CheckDir: globaltest.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/globaltest.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘globaltest/DESCRIPTION’ ... OK
* this is package ‘globaltest’ version ‘5.8.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘globaltest’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

globaltest.Rcheck/00install.out:

* installing *source* package ‘globaltest’ ...
** R
** data
** inst
** preparing package for lazy loading
Warning in .simpleDuplicateClass(def, prev) :
  A specification for class “data.frameOrNULL” in package ‘globaltest’ seems equivalent to one from package ‘Biobase’ and is not turning on duplicate class definitions for this class
Creating a generic function for ‘sort’ from package ‘base’ in package ‘globaltest’
Creating a generic function for ‘model.matrix’ from package ‘stats’ in package ‘globaltest’
Creating a generic function for ‘coefficients’ from package ‘stats’ in package ‘globaltest’
Creating a generic function for ‘fitted.values’ from package ‘stats’ in package ‘globaltest’
Creating a generic function for ‘residuals’ from package ‘stats’ in package ‘globaltest’
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘GlobalTest.Rnw’ 
   ‘GlobalTest_deprecated.Rnw’ 
** testing if installed package can be loaded

* DONE (globaltest)

globaltest.Rcheck/globaltest-Ex.timings:

nameusersystemelapsed
comparative3.5840.0483.637
diagnostics0.8200.0120.832
genesettesting000
goodnessoffit1.4360.0041.533
gt1.2560.0081.347
gt.object-class0.5840.0160.633
gtoptions000
mlogit0.0120.0000.012
multtest0.3800.0000.404
v4_checkerboard0.0520.0040.071
v4_geneplot0.3840.0000.398
v4_globaltest5.3690.0485.448
v4_multtest0.3800.0080.421
v4_permutations2.0320.0242.118
v4_regressionplot1.0200.0001.018
v4_sampleplot0.3760.0000.377
v4_sampling26.394 0.02830.899