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Package 21/514HostnameOS / ArchBUILDCHECKBUILD BIN
affylmGUI 1.28.0
Keith Satterley
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/affylmGUI
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: affylmGUI
Version: 1.28.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings affylmGUI_1.28.0.tar.gz
StartedAt: 2012-03-23 22:58:07 -0700 (Fri, 23 Mar 2012)
EndedAt: 2012-03-23 22:59:08 -0700 (Fri, 23 Mar 2012)
EllapsedTime: 60.7 seconds
RetCode: 0
Status:  OK 
CheckDir: affylmGUI.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/affylmGUI.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘affylmGUI/DESCRIPTION’ ... OK
* this is package ‘affylmGUI’ version ‘1.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘affylmGUI’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘affylmGUI/R/zzz.R’:
  .onAttach calls:
    require("tcltk", character.only = TRUE)
    require(limma)
    cat(paste("\nWarning: ActiveTcl could not be found in the Windows Registry.\n"))
    cat(paste("\nEither it has not been installed or it has not been installed with sufficient privileges.\n\n"))
    cat(paste("\naffylmGUI requires the Tcl/Tk extensions Tktable and BWidget which are not distributed with R,\n"))
    cat(paste("\nbut they are distributed with ActiveTcl.\n"))
    cat(paste("\nActiveTcl was found in the Windows Registry (for CURRENT_USER), installed in",     TclPath, sep = "\n"))
    cat(paste("\nThis directory will be added to the Tcl search path to enable affylmGUI\n"))
    cat(paste("to find the Tktable and BWidget extensions.\n"))
    cat(paste("\nActiveTcl was found in the Windows Registry (for LOCAL_MACHINE), installed in",     TclPath2, sep = "\n"))
    cat(paste("\nThis directory will be added to the Tcl search path to enable affylmGUI\n"))
    cat(paste("to find the Tktable and BWidget extensions.\n"))
    cat(paste("\nTo begin, type affylmGUI() or use the pull-down menu.\n"))
    cat(paste("\nTo begin, type affylmGUI()\n"))

Package startup functions should not change the search path.
Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
See section ‘Good practice’ in ?.onAttach.

ChooseCDF: no visible binding for global variable ‘.affylmGUIglobals’
ChooseCDF : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
ChooseCDF : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
ChooseCDF : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
ChooseContrastParameterization: no visible binding for global variable
  ‘affylmGUIenvironment’
ChooseContrastParameterization: no visible binding for global variable
  ‘.affylmGUIglobals’
ChooseContrastParameterization : onOK: no visible binding for global
  variable ‘.affylmGUIglobals’
ChooseContrastParameterization : onCancel: no visible binding for
  global variable ‘.affylmGUIglobals’
ChooseContrastParameterization : <anonymous>: no visible binding for
  global variable ‘.affylmGUIglobals’
ChooseEbayesStatistic: no visible binding for global variable
  ‘.affylmGUIglobals’
ChooseEbayesStatistic : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
ChooseEbayesStatistic : onCancel: no visible binding for global
  variable ‘.affylmGUIglobals’
ChooseEbayesStatistic : <anonymous>: no visible binding for global
  variable ‘.affylmGUIglobals’
ComputeContrasts: no visible binding for global variable
  ‘affylmGUIenvironment’
ComputeLinearModelFit: no visible binding for global variable
  ‘affylmGUIenvironment’
ComputeLinearModelFit: no visible binding for global variable
  ‘.affylmGUIglobals’
DeleteContrastParameterization: no visible binding for global variable
  ‘affylmGUIenvironment’
DensityPlot: no visible binding for global variable
  ‘affylmGUIenvironment’
DensityPlot: no visible binding for global variable ‘.affylmGUIglobals’
DensityPlot : plotFunction: no visible binding for global variable
  ‘.affylmGUIglobals’
DensityPlotAll: no visible binding for global variable
  ‘affylmGUIenvironment’
DensityPlotAll: no visible binding for global variable
  ‘.affylmGUIglobals’
DensityPlotAll : plotFunction: no visible binding for global variable
  ‘.affylmGUIglobals’
DensityPlotAll : plotFunction: no visible binding for global variable
  ‘affylmGUIenvironment’
ExportHTMLreport: no visible binding for global variable
  ‘affylmGUIenvironment’
ExportNormalizedExpressionValues: no visible binding for global
  variable ‘affylmGUIenvironment’
GetComponentsToExportInHTMLreport: no visible binding for global
  variable ‘affylmGUIenvironment’
GetComponentsToExportInHTMLreport: no visible binding for global
  variable ‘.affylmGUIglobals’
GetComponentsToExportInHTMLreport : onOK: no visible binding for global
  variable ‘.affylmGUIglobals’
GetComponentsToExportInHTMLreport : onCancel: no visible binding for
  global variable ‘.affylmGUIglobals’
GetComponentsToExportInHTMLreport : <anonymous>: no visible binding for
  global variable ‘.affylmGUIglobals’
GetContrast: no visible binding for global variable ‘.affylmGUIglobals’
GetContrast: no visible binding for global variable
  ‘affylmGUIenvironment’
GetContrast : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetContrast : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GetContrast : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
GetContrastNamesForHeatDiagram: no visible binding for global variable
  ‘.affylmGUIglobals’
GetContrastNamesForHeatDiagram : onOK: no visible binding for global
  variable ‘.affylmGUIglobals’
GetContrastNamesForHeatDiagram : onCancel: no visible binding for
  global variable ‘.affylmGUIglobals’
GetContrastNamesForHeatDiagram : <anonymous>: no visible binding for
  global variable ‘.affylmGUIglobals’
GetContrastParameterizationName: no visible binding for global variable
  ‘.affylmGUIglobals’
GetContrastParameterizationName : onOK: no visible binding for global
  variable ‘.affylmGUIglobals’
GetContrastParameterizationName : onCancel: no visible binding for
  global variable ‘.affylmGUIglobals’
GetContrastParameterizationName : <anonymous>: no visible binding for
  global variable ‘.affylmGUIglobals’
GetContrasts: no visible binding for global variable
  ‘affylmGUIenvironment’
GetDEcutoff: no visible binding for global variable ‘.affylmGUIglobals’
GetDEcutoff : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetDEcutoff : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GetDEcutoff : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
GetGeneLabelsOptions: no visible binding for global variable
  ‘.affylmGUIglobals’
GetGeneLabelsOptions : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetGeneLabelsOptions : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GetGeneLabelsOptions : <anonymous>: no visible binding for global
  variable ‘.affylmGUIglobals’
GetJpegOrPngParams: no visible binding for global variable
  ‘.affylmGUIglobals’
GetJpegOrPngParams : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetJpegOrPngParams : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GetJpegOrPngParams : <anonymous>: no visible binding for global
  variable ‘.affylmGUIglobals’
GetJpegOrPngX11Params: no visible binding for global variable
  ‘.affylmGUIglobals’
GetJpegOrPngX11Params : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetJpegOrPngX11Params : onCancel: no visible binding for global
  variable ‘.affylmGUIglobals’
GetJpegOrPngX11Params : <anonymous>: no visible binding for global
  variable ‘.affylmGUIglobals’
GetLogPLMDataChoice: no visible binding for global variable
  ‘.affylmGUIglobals’
GetLogPLMDataChoice : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GetLogPLMDataChoice : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetLogPLMDataChoice : <anonymous>: no visible binding for global
  variable ‘.affylmGUIglobals’
GetMultipleContrasts: no visible binding for global variable
  ‘.affylmGUIglobals’
GetMultipleContrasts: no visible binding for global variable
  ‘affylmGUIenvironment’
GetMultipleContrasts : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetMultipleContrasts : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GetMultipleContrasts : <anonymous>: no visible binding for global
  variable ‘.affylmGUIglobals’
GetNormalizationMethod: no visible binding for global variable
  ‘.affylmGUIglobals’
GetNormalizationMethod : onCancel: no visible binding for global
  variable ‘.affylmGUIglobals’
GetNormalizationMethod : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetNormalizationMethod : <anonymous>: no visible binding for global
  variable ‘.affylmGUIglobals’
GetPValueCutoff: no visible binding for global variable
  ‘.affylmGUIglobals’
GetPValueCutoff : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetPValueCutoff : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GetPValueCutoff : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
GetParameterizationName: no visible binding for global variable
  ‘.affylmGUIglobals’
GetParameterizationName : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetParameterizationName : onCancel: no visible binding for global
  variable ‘.affylmGUIglobals’
GetParameterizationName : <anonymous>: no visible binding for global
  variable ‘.affylmGUIglobals’
GetPlotLabels: no visible binding for global variable
  ‘.affylmGUIglobals’
GetPlotLabels : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetPlotLabels : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GetPlotLabels : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
GetPlotSize: no visible binding for global variable ‘.affylmGUIglobals’
GetPlotSize : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetPlotSize : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GetPlotSize : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
GetPlotTitle: no visible binding for global variable
  ‘.affylmGUIglobals’
GetPlotTitle : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetPlotTitle : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GetPlotTitle : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
GetResidualTypeChoice: no visible binding for global variable
  ‘.affylmGUIglobals’
GetResidualTypeChoice : onCancel: no visible binding for global
  variable ‘.affylmGUIglobals’
GetResidualTypeChoice : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetResidualTypeChoice : <anonymous>: no visible binding for global
  variable ‘.affylmGUIglobals’
GetSetNames: no visible binding for global variable ‘.affylmGUIglobals’
GetSetNames : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetSetNames : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GetSetNames : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
GetSlideNum: no visible binding for global variable
  ‘affylmGUIenvironment’
GetSlideNum: no visible binding for global variable ‘.affylmGUIglobals’
GetSlideNum : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetSlideNum : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GetSlideNum : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
GetSlideNums: no visible binding for global variable
  ‘affylmGUIenvironment’
GetSlideNums: no visible binding for global variable
  ‘.affylmGUIglobals’
GetSlideNums : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetSlideNums : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GetSlideNums : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
GetWhichProbes: no visible binding for global variable
  ‘.affylmGUIglobals’
GetWhichProbes : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GetWhichProbes : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetWhichProbes : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
GetWtAreaParams: no visible binding for global variable
  ‘.affylmGUIglobals’
GetWtAreaParams : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
GetWtAreaParams : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetWtAreaParams : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GetWtAreaParams : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
GetWtFlagParams: no visible binding for global variable
  ‘.affylmGUIglobals’
GetWtFlagParams : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetWtFlagParams : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GetWtFlagParams : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
GetWtFlagParams: no visible binding for global variable
  ‘affylmGUIenvironment’
GetlimmaDataSetName: no visible binding for global variable
  ‘affylmGUIenvironment’
GetlimmaDataSetName: no visible binding for global variable
  ‘.affylmGUIglobals’
GetlimmaDataSetName : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
GetlimmaDataSetName : <anonymous>: no visible binding for global
  variable ‘.affylmGUIglobals’
HTMLplotUsingFunction: no visible binding for global variable
  ‘.HTML.file’
HeatDiagramDialog: no visible binding for global variable
  ‘.affylmGUIglobals’
HeatDiagramDialog : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
HeatDiagramDialog : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
HeatDiagramDialog : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
HeatDiagramPlot: no visible binding for global variable
  ‘affylmGUIenvironment’
ImageArrayPlot: no visible binding for global variable
  ‘affylmGUIenvironment’
ImageArrayPlot: no visible binding for global variable
  ‘.affylmGUIglobals’
ImageArrayPlot : plotFunction: no visible binding for global variable
  ‘.affylmGUIglobals’
ImageQualityResidualPlot: no visible binding for global variable
  ‘affylmGUIenvironment’
ImageQualityResidualPlot: no visible binding for global variable
  ‘.affylmGUIglobals’
ImageQualityResidualPlot : plotFunction: no visible binding for global
  variable ‘.affylmGUIglobals’
ImageQualityWeightPlot: no visible binding for global variable
  ‘affylmGUIenvironment’
ImageQualityWeightPlot: no visible binding for global variable
  ‘.affylmGUIglobals’
ImageQualityWeightPlot : plotFunction: no visible binding for global
  variable ‘.affylmGUIglobals’
IntensityHistogram: no visible binding for global variable
  ‘affylmGUIenvironment’
IntensityHistogram: no visible binding for global variable
  ‘.affylmGUIglobals’
IntensityHistogram : plotFunction: no visible binding for global
  variable ‘.affylmGUIglobals’
IntensityHistogramAll: no visible binding for global variable
  ‘affylmGUIenvironment’
IntensityHistogramAll: no visible binding for global variable
  ‘.affylmGUIglobals’
IntensityHistogramAll : plotFunction: no visible binding for global
  variable ‘.affylmGUIglobals’
LogOddsPlot: no visible binding for global variable
  ‘affylmGUIenvironment’
NUSEPlotAll: no visible binding for global variable
  ‘affylmGUIenvironment’
NUSEPlotAll: no visible binding for global variable ‘.affylmGUIglobals’
NUSEPlotAll : plotFunction: no visible binding for global variable
  ‘.affylmGUIglobals’
NewLimmaFile: no visible binding for global variable
  ‘affylmGUIenvironment’
NormalizeNow: no visible binding for global variable
  ‘affylmGUIenvironment’
NormalizeNow: no visible binding for global variable
  ‘.affylmGUIglobals’
NormalizedIntensityBoxPlot: no visible binding for global variable
  ‘affylmGUIenvironment’
NormalizedIntensityBoxPlot: no visible binding for global variable
  ‘.affylmGUIglobals’
NormalizedIntensityBoxPlot : plotFunction: no visible binding for
  global variable ‘.affylmGUIglobals’
OpenALimmaFile: no visible binding for global variable
  ‘affylmGUIenvironment’
OpenCDFFile: no visible binding for global variable
  ‘affylmGUIenvironment’
OpenCDFandTargetsfiles : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
OpenCDFandTargetsfiles: no visible binding for global variable
  ‘affylmGUIenvironment’
OpenTargetsFile: no visible binding for global variable
  ‘affylmGUIenvironment’
PlotOptions: no visible binding for global variable ‘.affylmGUIglobals’
PlotOptions : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
PlotOptions : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
QQTplot: no visible binding for global variable ‘affylmGUIenvironment’
RLEPlotAll: no visible binding for global variable
  ‘affylmGUIenvironment’
RLEPlotAll: no visible binding for global variable ‘.affylmGUIglobals’
RLEPlotAll : plotFunction: no visible binding for global variable
  ‘.affylmGUIglobals’
RNADegradationPlotAll: no visible binding for global variable
  ‘affylmGUIenvironment’
RNADegradationPlotAll: no visible binding for global variable
  ‘.affylmGUIglobals’
RNADegradationPlotAll : plotFunction: no visible binding for global
  variable ‘.affylmGUIglobals’
RawIntensityBoxPlot: no visible binding for global variable
  ‘affylmGUIenvironment’
RawIntensityBoxPlot: no visible binding for global variable
  ‘.affylmGUIglobals’
RawIntensityBoxPlot : plotFunction: no visible binding for global
  variable ‘.affylmGUIglobals’
Resize: no visible binding for '<<-' assignment to ‘LocalHScale’
Resize: no visible binding for '<<-' assignment to ‘LocalVScale’
Resize: no visible binding for global variable ‘LocalHScale’
Resize: no visible binding for global variable ‘LocalVScale’
SaveAsLimmaFile: no visible binding for global variable
  ‘affylmGUIenvironment’
SaveAsLimmaFile: no visible binding for global variable
  ‘.affylmGUIglobals’
SaveLimmaFile: no visible binding for global variable
  ‘affylmGUIenvironment’
SaveLimmaFile: no visible binding for global variable
  ‘.affylmGUIglobals’
SetWD: no visible binding for global variable ‘.affylmGUIglobals’
TclRequire: no visible binding for global variable ‘.affylmGUIglobals’
TclRequire : onDestroy: no visible binding for global variable
  ‘.affylmGUIglobals’
TclRequire : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
TclRequire : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
UpDownOrBoth: no visible binding for global variable
  ‘.affylmGUIglobals’
UpDownOrBoth : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
UpDownOrBoth : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
VennDiagramPlot: no visible binding for global variable
  ‘affylmGUIenvironment’
ViewContrastsMatrixAsPairs: no visible binding for global variable
  ‘affylmGUIenvironment’
ViewContrastsMatrixInTable: no visible binding for global variable
  ‘affylmGUIenvironment’
ViewExistingContrastParameterization: no visible binding for global
  variable ‘affylmGUIenvironment’
ViewRNATargets: no visible binding for global variable
  ‘affylmGUIenvironment’
ViewRNATargets: no visible binding for global variable
  ‘.affylmGUIglobals’
ViewRNATargets : onClose: no visible binding for global variable
  ‘.affylmGUIglobals’
ViewRNATargets : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
affyPlotMA: no visible binding for global variable
  ‘affylmGUIenvironment’
affyPlotMA: no visible binding for global variable ‘.affylmGUIglobals’
affyPlotMA : plotFunction: no visible binding for global variable
  ‘.affylmGUIglobals’
affyPlotMAcontrast: no visible binding for global variable
  ‘affylmGUIenvironment’
affylmGUI: no visible binding for global variable
  ‘affylmGUIenvironment’
affylmGUI: no visible binding for global variable ‘.affylmGUIglobals’
affylmGUI : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
chooseDir: no visible binding for global variable ‘.affylmGUIglobals’
evalRcode: no visible binding for global variable ‘.affylmGUIglobals’
evalRcode : runOverall: no visible binding for global variable
  ‘.affylmGUIglobals’
evalRcode : runOverall: no visible binding for global variable
  ‘affylmGUIenvironment’
generalPlotFunction: no visible binding for global variable
  ‘.affylmGUIglobals’
generalPlotFunction: no visible binding for global variable
  ‘affylmGUIenvironment’
initGlobals: no visible binding for global variable
  ‘affylmGUIenvironment’
onDestroy: no visible binding for global variable
  ‘affylmGUIenvironment’
onExit: no visible binding for global variable ‘affylmGUIenvironment’
onExit: no visible binding for global variable ‘.affylmGUIglobals’
showTopTable: no visible binding for global variable
  ‘affylmGUIenvironment’
showTopTable : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

affylmGUI.Rcheck/00install.out:

* installing *source* package ‘affylmGUI’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘affylmGUI.Rnw’ 
   ‘extract.Rnw’ 
** testing if installed package can be loaded

* DONE (affylmGUI)