Back to the "Multiple platform build/check report"[A] B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 2/514HostnameOS / ArchBUILDCHECKBUILD BIN
a4Base 1.2.3
Tobias Verbeke
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/a4Base
Last Changed Rev: 63467 / Revision: 64395
Last Changed Date: 2012-03-05 03:35:56 -0800 (Mon, 05 Mar 2012)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: a4Base
Version: 1.2.3
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch a4Base_1.2.3.tar.gz
StartedAt: 2012-03-23 22:51:40 -0700 (Fri, 23 Mar 2012)
EndedAt: 2012-03-23 22:58:27 -0700 (Fri, 23 Mar 2012)
EllapsedTime: 406.8 seconds
RetCode: 0
Status:  OK 
CheckDir: a4Base.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/a4Base.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'a4Base/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'a4Base' version '1.2.3'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
  'gridSVG' 'JavaGD'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'a4Base' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plotLogRatio: no visible global function definition for 'JavaGD'
plotLogRatio: no visible global function definition for 'grid.garnish'
plotLogRatio: no visible global function definition for
  'grid.hyperlink'
plotLogRatio: no visible global function definition for 'grid.script'
plotLogRatio: no visible global function definition for 'gridToSVG'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

a4Base.Rcheck/00install.out:

* installing *source* package 'a4Base' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (a4Base)

a4Base.Rcheck/a4Base-Ex.timings:

nameusersystemelapsed
a4palette0.0210.0010.023
addQuantilesColors5.0110.3565.741
boxPlot5.7560.3426.614
combineTwoExpressionSet000
computeLogRatio17.363 0.64818.740
createExpressionSet0.0990.0010.102
filterVarInt5.0960.2825.689
heatmap.expressionSet0.0010.0020.002
histPvalue5.6470.3386.076
histpvalueplotter5.5890.3526.031
lassoReg5.1060.3115.481
logReg0.0000.0000.001
nlcvTT000
plot1gene4.9370.2955.337
plotComb2Samples5.1990.3215.633
plotCombMultSamples5.4120.4166.145
plotCombination2genes5.0810.2995.429
plotLogRatio16.730 0.62217.774
probabilitiesPlot0.0000.0010.000
probe2gene5.4100.2025.697
profilesPlot4.8580.3015.259
propdegenescalculation5.6230.3736.208
replicates0.0040.0010.003
spectralMap32.749 5.77939.432
tTest5.5510.4496.446
volcanoPlot5.7740.4616.412