Package: Heatplus

Version: 2.1.0

Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings Heatplus_2.1.0.tar.gz

StartedAt: 2012-03-24 00:58:54 -0700 (Sat, 24 Mar 2012)

EndedAt: 2012-03-24 00:59:26 -0700 (Sat, 24 Mar 2012)

EllapsedTime: 31.8 seconds

RetCode: 0

Status:  OK

CheckDir: Heatplus.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/Heatplus.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Heatplus/DESCRIPTION’ ... OK
* this is package ‘Heatplus’ version ‘2.1.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘Heatplus’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
annHeatmap2: no visible global function definition for ‘clustfun’
annHeatmap2: no visible global function definition for ‘distfun’
annHeatmap2: no visible binding for global variable ‘cuth’
annHeatmap2: no visible binding for global variable ‘asIs’
annHeatmap2: no visible binding for global variable ‘inclRef’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘Heatplus’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘annHeatmap.Rnw’ 
   ‘annHeatmapCommentedSource.Rnw’ 
   ‘oldHeatplus.Rnw’ 
** testing if installed package can be loaded

* DONE (Heatplus)

name	user	system	elapsed
RGBColVec	0.032	0.000	0.032
annHeatmap	2.832	0.052	2.882
annHeatmap2	0.252	0.008	0.262
breakColors	0.004	0.000	0.008
convAnnData	0.088	0.000	0.089
doLegend	0.004	0.000	0.002
g2r.colors	0.004	0.000	0.005
heatmapLayout	0.000	0.000	0.003
heatmap_2	2.296	0.016	2.321
heatmap_plus	1.036	0.012	1.050
modifyExistingList	0.004	0.000	0.001
niceBreaks	0.000	0.000	0.001
oldCutplot.dendrogram	0.056	0.000	0.054
oldPicketplot	0.012	0.004	0.015
picketPlot	0.140	0.000	0.139
plot.annHeatmap	0.252	0.004	0.256
print.annHeatmap	0.032	0.000	0.032
regHeatmap	0.044	0.000	0.046