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Package 147/514HostnameOS / ArchBUILDCHECKBUILD BIN
EBImage 3.10.0
Gregoire Pau
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/EBImage
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386 N O T   S U P P O R T E D

Summary

Package: EBImage
Version: 3.10.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings EBImage_3.10.0.tar.gz
StartedAt: 2012-03-24 00:09:19 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 00:11:10 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 111.1 seconds
RetCode: 0
Status:  OK 
CheckDir: EBImage.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/EBImage.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EBImage/DESCRIPTION’ ... OK
* this is package ‘EBImage’ version ‘3.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘EBImage’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc      2.8Mb
    images   1.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘EBImage/R/init.R’:
  .onLoad calls:
    cat("  : EBImage", packageDescription("EBImage", fields = "Version"),     ":\n")

Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
See section ‘Good practice’ in ?.onAttach.

* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
File ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/EBImage.Rcheck/EBImage/libs/EBImage.so’:
  Found ‘__assert_fail’, possibly from ‘assert’ (C)

Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.  The detected symbols
are linked into the code but might come from libraries and not actually
be called.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘test.R’
  Comparing ‘test.Rout’ to ‘test.Rout.save’ ...5d4
< Xlib:  extension "RANDR" missing on display ":13780.0".
19c18
< +   passed = TRUE
---
> +   passed=T
166c165
< checking 'blur' ... OK (hash=49934830)
---
> checking 'blur' ... OK (hash=49934617)
191c190
< checking 'paintObjects' ... OK (hash=43678131)
---
> checking 'paintObjects' ... OK (hash=55130488)
222c221
< checking 'resize' ... OK (hash=214938067)
---
> checking 'resize' ... OK (hash=214938068)
228c227
< checking 'blur' ... OK (hash=37689843)
---
> checking 'blur' ... OK (hash=37689383)
253c252
< checking 'paintObjects' ... OK (hash=27214353)
---
> checking 'paintObjects' ... OK (hash=38666710)
257a257,258
> 3: In approx(x[, 2], x[, 1], xout = xout, n = n) :
>   collapsing to unique 'x' values
283c284
< checking 'resize' ... OK (hash=2890111650)
---
> checking 'resize' ... OK (hash=2890111652)
290c291
< checking 'blur' ... OK (hash=521370799)
---
> checking 'blur' ... OK (hash=521369852)
292c293
< checking 'normalize' ... OK (hash=491794302)
---
> checking 'normalize' ... OK (hash=491794301)
306,308c307,309
< checking 'combine' ... OK (hash=5214602768)
< checking 'tile' ... OK (hash=10701043689)
< checking 'untile' ... OK (hash=11514959135)
---
> checking 'combine' ... OK (hash=5214602765)
> checking 'tile' ... OK (hash=10701043688)
> checking 'untile' ... OK (hash=11514959132)
313c314
< checking 'paintObjects' ... OK (hash=482954590)
---
> checking 'paintObjects' ... OK (hash=529056647)
322c323
< new test (hash=2261534013)
---
> new test (hash=2261534012)
340c341
< checking '+' ... OK (hash=4036640155)
---
> checking '+' ... OK (hash=4036640154)
344,348c345,349
< checking 'resize' ... OK (hash=12489520656)
< checking 'rotate' ... OK (hash=3723760786)
< checking 'flip' ... OK (hash=2283205999)
< checking 'flop' ... OK (hash=2261305961)
< checking 'translate' ... OK (hash=2264769851)
---
> checking 'resize' ... OK (hash=12489520632)
> checking 'rotate' ... OK (hash=3723760783)
> checking 'flip' ... OK (hash=2283205998)
> checking 'flop' ... OK (hash=2261305960)
> checking 'translate' ... OK (hash=2264769850)
351,353c352,354
< checking 'blur' ... OK (hash=2254283914)
< checking 'gblur' ... OK (hash=2260575569)
< checking 'normalize' ... OK (hash=2118652725)
---
> checking 'blur' ... OK (hash=2254280360)
> checking 'gblur' ... OK (hash=2260575565)
> checking 'normalize' ... OK (hash=2118652724)
367,369c368,370
< checking 'combine' ... OK (hash=21363016027)
< checking 'tile' ... OK (hash=20144415193)
< checking 'untile' ... OK (hash=21061933761)
---
> checking 'combine' ... OK (hash=21363016015)
> checking 'tile' ... OK (hash=20144415189)
> checking 'untile' ... OK (hash=21061933752)
374c375
< checking 'paintObjects' ... OK (hash=2142970391)
---
> checking 'paintObjects' ... OK (hash=2299205033)
390c391
< checking 'resize' ... OK (hash=1132892631)
---
> checking 'resize' ... OK (hash=1132892630)
397c398
< checking 'blur' ... OK (hash=203673238)
---
> checking 'blur' ... OK (hash=203672584)
422c423
< checking 'paintObjects' ... OK (hash=178016825)
---
> checking 'paintObjects' ... OK (hash=224055747)
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

EBImage.Rcheck/00install.out:

* installing *source* package ‘EBImage’ ...
checking for Magick-config... yes
* found ImageMagick version 6.6.5 Q16 
* found ImageMagick includes in -I/usr/include/ImageMagick
checking for pkg-config... yes
* compiling with GTK+ support
-----------------------------------------------------
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c EBImage.c -o EBImage.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c conversions.c -o conversions.o
conversions.c: In function ‘magick2SEXP’:
conversions.c:135:17: warning: ‘DispatchImage’ is deprecated (declared at /usr/include/ImageMagick/magick/deprecate.h:266)
conversions.c:137:17: warning: ‘DispatchImage’ is deprecated (declared at /usr/include/ImageMagick/magick/deprecate.h:266)
conversions.c:139:17: warning: ‘DispatchImage’ is deprecated (declared at /usr/include/ImageMagick/magick/deprecate.h:266)
conversions.c:144:17: warning: ‘DispatchImage’ is deprecated (declared at /usr/include/ImageMagick/magick/deprecate.h:266)
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c display.c -o display.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c distmap.c -o distmap.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c drawable.c -o drawable.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c features_haralick.c -o features_haralick.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c features_hull.c -o features_hull.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c features_moments.c -o features_moments.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c features_zernike.c -o features_zernike.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c filters_magick.c -o filters_magick.o
g++ -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c floodFill.cpp -o floodFill.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c io.c -o io.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c morphology.c -o morphology.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c normalize.c -o normalize.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c objects.c -o objects.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c ocontour.c -o ocontour.o
g++ -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c propagate.cpp -o propagate.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c thresh.c -o thresh.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c tile.c -o tile.o
tile.c: In function ‘untile’:
tile.c:130:37: warning: unused variable ‘id’
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c tools.c -o tools.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c translate.c -o translate.o
g++ -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -c watershed.cpp -o watershed.o
g++ -shared -L/usr/local/lib64 -o EBImage.so EBImage.o conversions.o display.o distmap.o drawable.o features_haralick.o features_hull.o features_moments.o features_zernike.o filters_magick.o floodFill.o io.o morphology.o normalize.o objects.o ocontour.o propagate.o thresh.o tile.o tools.o translate.o watershed.o -pthread -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpng14 -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 -L/usr/lib64 -L/usr/lib64 -L/usr/lib64 -lMagickCore -llcms -ltiff -lfreetype -ljpeg -lfontconfig -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lm -lpthread -lltdl -L/usr/lib64 -lMagickWand -lMagickCore -llcms -ltiff -lfreetype -ljpeg -lfontconfig -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lm -lpthread -lltdl -L/home/biocbuild/bbs-2.9-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.9-bioc/meat/EBImage.Rcheck/EBImage/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘EBImage-installation.Rnw’ 
   ‘EBImage-introduction.Rnw’ 
** testing if installed package can be loaded
Xlib:  extension "RANDR" missing on display ":13780.0".

* DONE (EBImage)

EBImage.Rcheck/EBImage-Ex.timings:

nameusersystemelapsed
EBImage10.440 0.208 7.716
Image0.8800.0240.603
blur0.9560.0360.550
bwlabel3.2290.1002.924
channel3.8920.1643.289
combine0.0040.0000.001
computeFeatures2.2680.0121.770
display4.5320.0042.281
distmap0.3960.0000.197
drawCircle0.1680.0000.118
drawable0.7880.0080.403
equalize0.5400.0000.271
feature-obsolete2.3040.0121.727
fillHull0.7930.0200.486
filter22.5280.0122.376
floodFill0.7240.0000.452
getFeatures2.1520.0041.798
io1.1200.0040.624
morphology0.1680.0000.081
normalize0.2120.0000.110
ocontour0.1240.0080.067
paintObjects5.1840.1964.804
propagate1.5640.0201.589
rmObjects0.3760.0040.169
spatial1.4520.0040.638
stackObjects8.3251.7889.530
thresh0.5920.0080.426
tile4.2240.0362.341
translate0.4600.0720.370
watershed0.3840.0040.196