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Package 136/514HostnameOS / ArchBUILDCHECKBUILD BIN
DiffBind 1.0.9
Rory Stark
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/DiffBind
Last Changed Rev: 64078 / Revision: 64395
Last Changed Date: 2012-03-18 15:19:15 -0700 (Sun, 18 Mar 2012)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: DiffBind
Version: 1.0.9
Command: rm -rf DiffBind.buildbin-libdir && mkdir DiffBind.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DiffBind.buildbin-libdir DiffBind_1.0.9.tar.gz
StartedAt: 2012-03-24 03:39:37 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 03:41:26 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 109.6 seconds
RetCode: 0
Status:  OK  
PackageFile: DiffBind_1.0.9.zip
PackageFileSize: 2.187 MiB

Command output


install for i386

* installing *source* package 'DiffBind' ...
** libs
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c bam.cpp -o bam.o
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c bamReader.cpp -o bamReader.o
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c bamWriter.cpp -o bamWriter.o
bamWriter.cpp: In member function 'virtual bode::Writer* bode::BamWriter::open(const string&, void*)':
bamWriter.cpp:34:17: warning: variable 'bht' set but not used [-Wunused-but-set-variable]
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c bed.cpp -o bed.o
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c bedReader.cpp -o bedReader.o
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c croi_func.cpp -o croi_func.o
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c croi_main.cpp -o croi_main.o
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c interval.cpp -o interval.o
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c intervalNode.cpp -o intervalNode.o
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c intervalSet.cpp -o intervalSet.o
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c intervalSetSplit.cpp -o intervalSetSplit.o
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c intervalTree.cpp -o intervalTree.o
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c intervalTreeSplit.cpp -o intervalTreeSplit.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c mergeOne.c -o mergeOne.o
mergeOne.c: In function 'mo_mergeTwo':
mergeOne.c:351:7: warning: variable 'keepAll' set but not used [-Wunused-but-set-variable]
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c reader.cpp -o reader.o
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c sequence.cpp -o sequence.o
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c util.cpp -o util.o
g++  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c writer.cpp -o writer.o
g++ -shared -s -static-libgcc -o DiffBind.dll tmp.def bam.o bamReader.o bamWriter.o bed.o bedReader.o croi_func.o croi_main.o interval.o intervalNode.o intervalSet.o intervalSetSplit.o intervalTree.o intervalTreeSplit.o mergeOne.o reader.o sequence.o util.o writer.o D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/usrlib/i386/libbam.a D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/usrlib/i386/libbam.a D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/usrlib/i386/libbcf.a D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/usrlib/i386/libtabix.a -lws2_32 -LD:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/DiffBind.buildbin-libdir/DiffBind/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'DiffBind.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'DiffBind' ...
** libs
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c bam.cpp -o bam.o
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c bamReader.cpp -o bamReader.o
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c bamWriter.cpp -o bamWriter.o
bamWriter.cpp: In member function 'virtual bode::Writer* bode::BamWriter::open(const string&, void*)':
bamWriter.cpp:34:17: warning: variable 'bht' set but not used [-Wunused-but-set-variable]
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c bed.cpp -o bed.o
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c bedReader.cpp -o bedReader.o
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c croi_func.cpp -o croi_func.o
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c croi_main.cpp -o croi_main.o
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c interval.cpp -o interval.o
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c intervalNode.cpp -o intervalNode.o
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c intervalSet.cpp -o intervalSet.o
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c intervalSetSplit.cpp -o intervalSetSplit.o
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c intervalTree.cpp -o intervalTree.o
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c intervalTreeSplit.cpp -o intervalTreeSplit.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c mergeOne.c -o mergeOne.o
mergeOne.c: In function 'mo_mergeTwo':
mergeOne.c:351:7: warning: variable 'keepAll' set but not used [-Wunused-but-set-variable]
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c reader.cpp -o reader.o
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c sequence.cpp -o sequence.o
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c util.cpp -o util.o
g++ -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c writer.cpp -o writer.o
g++ -m64 -shared -s -static-libgcc -o DiffBind.dll tmp.def bam.o bamReader.o bamWriter.o bed.o bedReader.o croi_func.o croi_main.o interval.o intervalNode.o intervalSet.o intervalSetSplit.o intervalTree.o intervalTreeSplit.o mergeOne.o reader.o sequence.o util.o writer.o D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/usrlib/x64/libbam.a D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/usrlib/x64/libbam.a D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/usrlib/x64/libbcf.a D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/usrlib/x64/libtabix.a -lws2_32 -LD:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/DiffBind.buildbin-libdir/DiffBind/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DiffBind' as DiffBind_1.0.9.zip

* DONE (DiffBind)