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Package 93/514HostnameOS / ArchBUILDCHECKBUILD BIN
ChIPsim 1.8.0
Peter Humburg
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/ChIPsim
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: ChIPsim
Version: 1.8.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings ChIPsim_1.8.0.tar.gz
StartedAt: 2012-03-23 23:46:27 -0700 (Fri, 23 Mar 2012)
EndedAt: 2012-03-23 23:50:08 -0700 (Fri, 23 Mar 2012)
EllapsedTime: 220.7 seconds
RetCode: 0
Status:  OK 
CheckDir: ChIPsim.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/ChIPsim.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChIPsim/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChIPsim’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘ChIPsim’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

ChIPsim.Rcheck/00install.out:

* installing *source* package ‘ChIPsim’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘ChIPsimIntro.Rnw’ 
** testing if installed package can be loaded

* DONE (ChIPsim)

ChIPsim.Rcheck/ChIPsim-Ex.timings:

nameusersystemelapsed
ChIPsim-package000
bindDens2readDens4.6480.0484.872
decodeQuality0.0000.0000.002
defaultControl0.0040.0000.002
defaultErrorProb000
defaultFunctions0.0040.0000.003
defaultGenerator0.0920.0000.093
extractQuality000
feat2dens1.9210.0121.934
featureDensity0.0000.0000.001
makeFeatures0.1040.0000.108
placeFeatures0.1640.0080.179
pos2fastq0.0720.0080.077
readError0.0000.0000.001
reconcileFeatures0.1800.0000.177
sampleReads2.9720.0323.004
simChIP000
simpleNames000
stableFeature0.0000.0000.001
writeFASTQ0.0000.0000.001