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Package 227/479HostnameOS / ArchBUILDCHECKBUILD BIN
hexbin 1.27.0
Nicholas Lewin-Koh
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/hexbin
Last Changed Rev: 54802 / Revision: 56603
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: hexbin
Version: 1.27.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch hexbin_1.27.0.tar.gz
StartedAt: 2011-07-07 03:48:34 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 03:49:56 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 82.1 seconds
RetCode: 0
Status:  OK 
CheckDir: hexbin.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/hexbin.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-22 r56208)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'hexbin/DESCRIPTION' ... OK
* this is package 'hexbin' version '1.27.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hexbin' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
mixcolors: no visible global function definition for 'coords'
* checking Rd files ... NOTE
prepare_Rd: NHANES.Rd:41-43: Dropping empty section \references
prepare_Rd: hexList.Rd:46-48: Dropping empty section \examples
prepare_Rd: hexVP.abline.Rd:43-45: Dropping empty section \examples
prepare_Rd: hexViewport.Rd:25-27: Dropping empty section \details
prepare_Rd: panel.hexgrid.Rd:15-16: Dropping empty section \details
prepare_Rd: panel.hexgrid.Rd:23-24: Dropping empty section \examples
prepare_Rd: panel.hexloess.Rd:28-29: Dropping empty section \details
prepare_Rd: panel.hexloess.Rd:41-42: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'hdiffplot.R'
  Comparing 'hdiffplot.Rout' to 'hdiffplot.Rout.save' ...9c9
<   Buggy version of Kinderman-Ramage generator used
---
>   Buggy version of Kinderman-Ramage generator used.
24,25c24,25
<   ..@ xcm   : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
<   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
>   ..@ xcm   : num [1:535]  0.370  1.338  0.721 -1.846 -0.965 ...
>   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
43c43
<   ..@ ycm   : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.9 ...
---
>   ..@ ycm   : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.90 ...
64,65c64,65
<   ..@ xcm   : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
<   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
>   ..@ xcm   : num [1:535]  0.370  1.338  0.721 -1.846 -0.965 ...
>   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
84,85c84,85
<   ..@ xcm   : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
<   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
>   ..@ xcm   : num [1:535]  0.370  1.338  0.721 -1.846 -0.965 ...
>   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
89c89
<   ..@ ybnds : num [1:2] -4.23 4.7
---
>   ..@ ybnds : num [1:2] -4.23  4.70
109,110c109,110
<   ..@ xcm   : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
<   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
>   ..@ xcm   : num [1:535]  0.370  1.338  0.721 -1.846 -0.965 ...
>   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
114c114
<   ..@ ybnds : num [1:2] -4.23 4.7
---
>   ..@ ybnds : num [1:2] -4.23  4.70
  Running 'hray.R'
  Running 'large.R'
  Running 'viewp-ex.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

hexbin.Rcheck/00install.out:

* installing *source* package 'hexbin' ...
** libs
*** arch - i386
gfortran-4.2 -arch i386   -fPIC  -g -O2 -Wall -pedantic -c hbin.f -o hbin.o
Warning: Nonconforming tab character in column 1 of line 1
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gfortran-4.2 -arch i386   -fPIC  -g -O2 -Wall -pedantic -c hcell.f -o hcell.o
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gfortran-4.2 -arch i386   -fPIC  -g -O2 -Wall -pedantic -c herode.f -o herode.o
Warning: Nonconforming tab character in column 1 of line 1
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herode.f:37.26:

       integer n, bdim(2) ! number of cells and 2-D array bounds        
                         1
Warning: Nonconforming tab character at (1)
herode.f:38.24:

       integer erode(1) ! erosion status                                
                       1
Warning: Nonconforming tab character at (1)
herode.f:39.15:

       integer ncell(1),ncnt(1)  ! extracted id's and expanded counts   
              1
Warning: Nonconforming tab character at (1)
herode.f:40.24:

       integer sides(1) ! number of exposed sides                       
                       1
Warning: Nonconforming tab character at (1)
herode.f:41.25:

       integer neib(6,*) ! pointers to the neighbors                    
                        1
Warning: Nonconforming tab character at (1)
herode.f:42.26:

       logical exist(0:*) ! cell existence                              
                         1
Warning: Nonconforming tab character at (1)
herode.f:45.15:

       integer inc1(6), inc2(6) ! increments to get neighbors           
              1
Warning: Nonconforming tab character at (1)
herode.f:111.32:

             if (c .eq. 1) then                                         
                               1
Warning: Nonconforming tab character at (1)
gfortran-4.2 -arch i386   -fPIC  -g -O2 -Wall -pedantic -c hsm.f -o hsm.o
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gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o hexbin.so hbin.o hcell.o herode.o hsm.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/hexbin.Rcheck/hexbin/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for "plot" from package "graphics" in package "hexbin"
Creating a generic function for "summary" from package "base" in package "hexbin"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'hexagon_binning.Rnw' 
** testing if installed package can be loaded

* DONE (hexbin)

hexbin.Rcheck/hexbin-Ex.timings:

nameusersystemelapsed
NHANES0.1410.0210.172
colramp0.3090.0100.425
erode.hexbin0.3290.0130.400
getHMedian0.0260.0030.028
gplot.hexbin1.0520.0351.230
grid.hexagons0.2840.0140.325
grid.hexlegend000
hboxplot0.1660.0040.188
hcell2xy0.0520.0050.064
hcell2xyInt0.0110.0020.016
hdiffplot0.2880.0120.327
hexGraphPaper0.1090.0100.142
hexMA.loess2.0430.0982.472
hexTapply0.2270.0130.242
hexVP-class0.2110.0080.224
hexViewport0.1230.0030.126
hexbin0.2960.0190.320
hexbinplot1.8190.1712.007
hexplom4.1270.4604.666
hexpolygon0.0440.0010.045
optShape0.0410.0040.045
panel.hexboxplot0.2490.0250.274
plotMAhex0.5010.0800.589
smooth.hexbin0.3890.0140.406