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Package 215/479HostnameOS / ArchBUILDCHECKBUILD BIN
graph 1.31.1
Seth Falcon
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/graph
Last Changed Rev: 54945 / Revision: 56603
Last Changed Date: 2011-04-19 13:42:15 -0700 (Tue, 19 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: graph
Version: 1.31.1
Command: mkdir graph.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=graph.buildbin-libdir graph_1.31.1.tar.gz >graph-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=graph.buildbin-libdir --install="check:graph-install.out" --force-multiarch --no-vignettes --timings graph_1.31.1.tar.gz && mv graph.buildbin-libdir/* graph.Rcheck/ && rmdir graph.buildbin-libdir
StartedAt: 2011-07-07 05:17:03 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 05:18:46 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 103.4 seconds
RetCode: 0
Status:  OK  
CheckDir: graph.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/graph.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.31.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'graph' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using tools::resaveRdaFiles() or R CMD build --resave-data
                  old_size new_size compress
  esetsFemale.rda    121Kb     58Kb       xz
  esetsMale.rda      119Kb     56Kb       xz
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'graph_unit_tests.R'
 OK
** running tests for arch 'x64'
  Running 'graph_unit_tests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

graph.Rcheck/00install.out:


install for i386

* installing *source* package 'graph' ...
** libs
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c graph.c -o graph.o
gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
mv graph.dll BioC_graph.dll
installing to D:/biocbld/bbs-2.9-bioc/meat/graph.buildbin-libdir/graph/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GraphClass.Rnw' 
   'MultiGraphClass.Rnw' 
   'clusterGraph.Rnw' 
   'graph.Rnw' 
   'graphAttributes.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'graph' ...
** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c graph.c -o graph.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
mv graph.dll BioC_graph.dll
installing to D:/biocbld/bbs-2.9-bioc/meat/graph.buildbin-libdir/graph/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'graph' as graph_1.31.1.zip

* DONE (graph)

graph.Rcheck/graph-Ex.timings:

nameusersystemelapsed
DFS0.080.000.08
IMCA0.400.000.41
MAPKsig0.160.000.15
MultiGraph-class0.220.000.22
acc-methods0.030.000.03
addEdge0.010.000.02
addNode0.050.000.05
adj-methods0.020.000.01
apoptosisGraph0.030.000.03
attrData-class000
aveNumEdges0.010.000.02
biocRepos000
boundary000
buildRepDepGraph000
calcProb000
calcSumProb000
clearNode0.010.000.02
clusterGraph-class000
clusteringCoefficient-methods0.020.000.01
combineNodes0.050.000.05
distGraph-class000
duplicatedEdges000
edgeMatrix0.020.000.02
edgeSets0.030.000.03
edgeWeights0.010.000.02
fromGXL-methods0.490.000.48
graph-class0.010.000.02
graph2SparseM0.300.000.29
graphAM-class0.020.000.02
graphBAM-class0.060.000.06
graphExamples0.010.000.02
graphNEL-class000
inEdges000
leaves0.020.020.03
listEdges0.010.000.01
matrix2Graph0.080.000.08
mostEdges0.030.000.03
numNoEdges000
pancrCaIni0.090.000.09
randomEGraph000
randomGraph0.020.000.02
randomNodeGraph000
removeEdge0.010.000.01
removeNode0.020.000.02
renderInfo-class0.020.000.01
reverseEdgeDirections000
simpleEdge-class0.010.000.02
standardLabeling0.080.000.08
subGraph000
toDotR-methods0.050.000.04
ugraph0.010.000.02
validGraph000