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Package 209/479HostnameOS / ArchBUILDCHECKBUILD BIN
goProfiles 1.15.0
Alex Sanchez
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/goProfiles
Last Changed Rev: 54810 / Revision: 56603
Last Changed Date: 2011-04-13 18:14:51 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 

Summary

Package: goProfiles
Version: 1.15.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch goProfiles_1.15.0.tar.gz
StartedAt: 2011-07-07 03:32:50 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 03:34:52 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 122.1 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: goProfiles.Rcheck
Warnings: 1

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/goProfiles.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-22 r56208)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'goProfiles/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'goProfiles' version '1.15.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'goProfiles' can be installed ... WARNING
Found the following significant warnings:
  Warning: value of 'results' option should be lowercase
See '/Users/biocbuild/bbs-2.9-bioc/meat/goProfiles.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  '/Users/biocbuild/bbs-2.9-bioc/meat/goProfiles.Rcheck/00check.log'
for details

goProfiles.Rcheck/00install.out:

* installing *source* package 'goProfiles' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: DBI

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'goProfiles.Rnw' 
Warning: value of 'results' option should be lowercase
** testing if installed package can be loaded

* DONE (goProfiles)

goProfiles.Rcheck/goProfiles-Ex.timings:

nameusersystemelapsed
CD4ids0.0290.0040.033
GOTermsList000
basicProfile4.2560.3355.135
compSummary3.0610.0963.298
compareGOProfiles2.7370.0512.812
compareGeneLists11.749 0.21312.164
compareProfilesLists0.0010.0000.000
contractedProfile1.1320.0201.163
conversionFunctions0.0660.0050.073
drosophila0.0080.0020.009
equivSummary0.0000.0000.001
equivalentGOProfiles2.4380.0392.495
expandedLevel1.4890.0591.557
expandedProfile0.5970.0140.615
fisherGOProfiles5.6590.1995.896
fitGOProfile0.0000.0000.001
hugoIds0.0300.0010.032
mergeProfilesLists4.3730.1394.559
ngenes1.1280.0211.158
omimIds0.0110.0010.012
plotProfiles4.5240.1434.752
printProfiles4.0560.1484.307
prostateIds0.0080.0010.010