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Package 194/479HostnameOS / ArchBUILDCHECKBUILD BIN
genomes 1.9.1
Chris Stubben
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genomes
Last Changed Rev: 56026 / Revision: 56603
Last Changed Date: 2011-06-07 14:12:31 -0700 (Tue, 07 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: genomes
Version: 1.9.1
Command: mkdir genomes.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=genomes.buildbin-libdir genomes_1.9.1.tar.gz >genomes-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=genomes.buildbin-libdir --install="check:genomes-install.out" --force-multiarch --no-vignettes --timings genomes_1.9.1.tar.gz && mv genomes.buildbin-libdir/* genomes.Rcheck/ && rmdir genomes.buildbin-libdir
StartedAt: 2011-07-07 05:05:32 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 05:07:23 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 111.3 seconds
RetCode: 0
Status:  OK  
CheckDir: genomes.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/genomes.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'genomes/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'genomes' version '1.9.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'genomes' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

genomes.Rcheck/00install.out:


install for i386

* installing *source* package 'genomes' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'genome-tables.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'genomes' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genomes' as genomes_1.9.1.zip

* DONE (genomes)

genomes.Rcheck/genomes-Ex.timings:

nameusersystemelapsed
acc2date0.180.009.92
doublingTime0.280.000.28
genomes-lines0.200.000.21
genomes-plot0.170.000.17
genomes-print0.120.000.13
genomes-subset0.090.000.09
genomes-summary0.020.000.02
genomes-update000
genomes0.160.000.15
genus0.210.000.22
image20.080.000.08
lenvs0.020.000.02
leuks0.140.000.14
like0.120.000.12
lproks0.360.010.38
plotby0.440.000.43
pub2date0.170.001.62
pubmed0.080.000.58
revhist 0.09 0.0012.56
species0.280.000.28
table2000
taxid2names0.000.000.41
term2neighbor0.060.001.20
term2summary1.040.014.64
top0.250.000.25
virus0.100.000.76
year0.090.000.09